Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2321 ATGAGCACGCCAACTGTTTGTGAAAATGCCAAAGAAGATATTTTTTTCCTTCATCAATTATGGCATGGGAATGAGGAATTGGAAGCCTTAAAGGGCATGCTTCAGCACGATTTCAAGAAATGGGGCTCCATGATCAGGACCTTATGTGTTGATTCCAGGCACAGGGAAGCCTTGTCCCTTTTCCATCAATGCATAAAGGGTTATGCAGATTTTAAACCCGATCACAGTGTTGTTGCTTCAATTCTCAAGTCTTGTTCTGCCCTATTGGCTCTCAAATTGGGCACAGCTCTTCATGGCTATGTTGTTAAGCAGGGCCATGATGCTTGCCAGGTCACTAACAAAGCATTGCTTAACATGTATGCAAAATGTGGCAGGCTTGTTGAATGTAATAAGATGTTTTATCAGCTCAGCCACCGTGATTCTGTCATTTGGAACATTGTTCTATCTGGGTTTTCAGGGTCCATGAAGTACGATTTGGATGTGATAAGGATGTTTCGGACAATGCACTCCAATGGGGCGGCTATGCCCAATTCGGTTACTGCTGCTATTCTTCTTCCTAGTGTGCAGGCTTATGTGATTAAGTCTGGTTTTGAGGCAGACACCCTTGCTGGGAATGCTCTTATATCAATGTATGCAAAGTGTGGGCTGGTATCTCATGATGCATATGCTGTTTTTGATGACATTGGTCACAAAGATGTTGTTTCATGGAATGCAATGATTGCAGGTCTTGCTGAGAATCTCTTGTTTGAAGACGCATTTACATTGTTCGGTTCAATGGTGAAAGGGCCTACACAACCAAATTATGCCACTATAGCAAATATTCTGCCTGTTTGTGCGTTGCTTGCTGAGAACGTTGCATACCAGTATGGAAGGCAAATCCACTCTTATGTGCTGCAACGGGCTGAACTGTCAGCTGATGTTTCTGTGTCCAATGCTTTGATTAGCTTCTACATAAGAATTGGTCGGATGATGGAAGCGGAATCTTTATTTTGGGCAATGGATGCAAGGGACTTGGTCTCTTGGAATGCTATTATTGCAGGATTCACATCAAATGGTGAATGGTTAAAAGCATTGCATCTATTGAGTAATTTAGTATCTCTAGAGATGCTATTGCCTGATTCTGTGACTATTGTTAGCATACTTCCACTTTGTGCTCAATTGAGAAACTTGCATGTAGGGAAACAGATCCATGCATATATCTTCAGACACCATTATCTTTTTGAAGATACTACTGTTGGGAATGCTTTAGTTAGTTTCTATGCAAAATGTGGCAATACAGAAAAAGCATATCATACTTTCAATATGATWCCTAGGAAAGATTTGATTTCATGGAATTCTATTCTTGAYGCCTTTGGAGAGAAGAGGCATCATTCAAGATTTCTCAGCTTGTTACATTCAATGCTTAAACTAGGAATTAGACCTGACTCAGTCACAGTATTGGCCACAATCCATTTTTGTGCTTCTCTCTTGRTAGTAGAAAAGGTTAAAGAAATACACAATTATTCTATTAAGGTTGGATCTCTATTTGGTGACACTGCTCCCACAATTGGAAATGCAATACTTGATGCATATGCTAAATGTGGTAACATGGACTATGCTAACAGAATGTTTCAGAAACTATCAGAAAAAAGGAATCTGGTCTCGTGCAATTCGATGATTTCAGGTTATGTGAGTTTAGGATCACATCATGATGCAAATATGATTTTTAGTGGGATGTCTGAGACAGATCTTACCACCTGGAATCTTATGATCCGGGTATATGCCGAAAATGATTGTCGGGATCAAGCTCTCAGACTGTTCTACGAGTTACAAGCTCAAAGGATGAAGCCAGATGAGGTGACTATCATGAGCATCCTTCCAGTATGCACACAAATGGCATCGGCACACTTGCTAACACAATGTCACGGCTATATCGTTCGTTCTTGTTTTGAGGATCTTCACCTAAAAGGAGCCCTCTTAGATGCATATGCAAAATGTGGTATCATAGGTTGTGCAAATAAGCTATTTCGCTCAAGTGCTGTTAAGGATTTGGTTATGTTTACTGCTATGATTGGTGGGTATGCCATGCATGGTTTGAGTGAAGAAGCACTTAGAATTTTTTCTGATATGCTTAAAATRGGAATCAAGCCAGATCATGTTATCTTCACTTGTGTATTATCAGCTTGCAGTCATGCTGGCCATGTAGATGAAGGTCTGCAGATATTTTATTCRATGGAGAAAATCCATGGTATGAAACCAAATGCAGAACAGTATGCTTGTGTGGTGGATCTACTCGCTCGAGGTGGCCGAGTTAGGGAAGCATATTCTCTCATCACSAAGATGCCAATTGAAGCTAATGCCAGCCTTTGGGGGTCATTGCTTGGTGCCTGCAAAATCCATCATGAAGTCGAATTGGGGCGCATTGTAGCCARCCATCTCTTCAAAATCAAAGCTGACGACATTGGAAACTATATTGTTTTATCGAATTTGTATGCAGCAGATGCTAGATGGGATGGGGTCATGGAGGTTAGAAAGATGATGAAGAACAAAGATTTGAAAAAGCCAGCAGGATGCAGTTGGATTGAAGTTGAGAAGAAACATAAYATATTTGTGGCTGGGGATTGTTCCCACYCACAAAGAAGCATTATTTACAGTACTCTATGTACATTGGATCAACAAATTAAAGAACCAATAGAGTTTTTAGCGTAA 2688 0.4029 MSTPTVCENAKEDIFFLHQLWHGNEELEALKGMLQHDFKKWGSMIRTLCVDSRHREALSLFHQCIKGYADFKPDHSVVASILKSCSALLALKLGTALHGYVVKQGHDACQVTNKALLNMYAKCGRLVECNKMFYQLSHRDSVIWNIVLSGFSGSMKYDLDVIRMFRTMHSNGAAMPNSVTAAILLPSVQAYVIKSGFEADTLAGNALISMYAKCGLVSHDAYAVFDDIGHKDVVSWNAMIAGLAENLLFEDAFTLFGSMVKGPTQPNYATIANILPVCALLAENVAYQYGRQIHSYVLQRAELSADVSVSNALISFYIRIGRMMEAESLFWAMDARDLVSWNAIIAGFTSNGEWLKALHLLSNLVSLEMLLPDSVTIVSILPLCAQLRNLHVGKQIHAYIFRHHYLFEDTTVGNALVSFYAKCGNTEKAYHTFNMIPRKDLISWNSILDAFGEKRHHSRFLSLLHSMLKLGIRPDSVTVLATIHFCASLLXVEKVKEIHNYSIKVGSLFGDTAPTIGNAILDAYAKCGNMDYANRMFQKLSEKRNLVSCNSMISGYVSLGSHHDANMIFSGMSETDLTTWNLMIRVYAENDCRDQALRLFYELQAQRMKPDEVTIMSILPVCTQMASAHLLTQCHGYIVRSCFEDLHLKGALLDAYAKCGIIGCANKLFRSSAVKDLVMFTAMIGGYAMHGLSEEALRIFSDMLKXGIKPDHVIFTCVLSACSHAGHVDEGLQIFYSMEKIHGMKPNAEQYACVVDLLARGGRVREAYSLITKMPIEANASLWGSLLGACKIHHEVELGRIVAXHLFKIKADDIGNYIVLSNLYAADARWDGVMEVRKMMKNKDLKKPAGCSWIEVEKKHNIFVAGDCSHXQRSIIYSTLCTLDQQIKEPIEFLA* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 711 746 IPR002885 -
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Amo08g2321 895 Pfam PPR repeat family 231 271 IPR002885 -
Amo08g2321 895 Pfam PPR repeat family 675 712 IPR002885 -
Amo08g2321 895 PANTHER OS02G0290000 PROTEIN 392 489 - -
Amo08g2321 895 Pfam PPR repeat 713 740 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 414 440 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 518 543 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 115 136 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 311 335 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 579 604 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 442 472 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 547 573 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 339 363 IPR002885 -
Amo08g2321 895 Pfam PPR repeat 41 63 IPR002885 -
Amo08g2321 895 PANTHER OS02G0290000 PROTEIN 32 125 - -
Amo08g2321 895 PANTHER OS02G0290000 PROTEIN 492 890 - -
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Amo08g2321 895 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Amo08g2321 895 TIGRFAM PPR: pentatricopeptide repeat domain 547 576 IPR002885 -
Amo08g2321 895 TIGRFAM PPR: pentatricopeptide repeat domain 442 476 IPR002885 -
Amo08g2321 895 TIGRFAM PPR: pentatricopeptide repeat domain 234 261 IPR002885 -
Amo08g2321 895 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Amo08g2321 895 TIGRFAM PPR: pentatricopeptide repeat domain 713 748 IPR002885 -
Amo08g2321 895 Gene3D Tetratricopeptide repeat domain 39 189 IPR011990 GO:0005515
Amo08g2321 895 Gene3D Tetratricopeptide repeat domain 648 880 IPR011990 GO:0005515
Amo08g2321 895 Gene3D Tetratricopeptide repeat domain 515 644 IPR011990 GO:0005515
Amo08g2321 895 PANTHER OS07G0578800 PROTEIN-RELATED 392 489 IPR045215 GO:0003723|GO:0009451
Amo08g2321 895 Pfam E motif 793 855 IPR046848 -
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 175 IPR002885 -
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 676 710 IPR002885 -
Amo08g2321 895 Gene3D Tetratricopeptide repeat domain 190 284 IPR011990 GO:0005515
Amo08g2321 895 Gene3D Tetratricopeptide repeat domain 406 514 IPR011990 GO:0005515
Amo08g2321 895 Gene3D Tetratricopeptide repeat domain 285 405 IPR011990 GO:0005515
Amo08g2321 895 PANTHER OS07G0578800 PROTEIN-RELATED 32 125 IPR045215 GO:0003723|GO:0009451
Amo08g2321 895 PANTHER OS07G0578800 PROTEIN-RELATED 122 390 IPR045215 GO:0003723|GO:0009451
Amo08g2321 895 PANTHER OS07G0578800 PROTEIN-RELATED 492 890 IPR045215 GO:0003723|GO:0009451
Amo08g2321 895 PANTHER OS02G0290000 PROTEIN 122 390 - -
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Amo08g2321 895 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2321 Amo-Chr8 36579720 36582544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo08g2321 168 889 Glycoside Hydrolase AT3G49170 28.993 1.92e-95 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2321 - - adu:107463348 1748.02