Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01971 ATGAAACAGAGGCAACTCTTTTTCTTGTTTCCTATCAACAACATTCTCCTTCGTCTCGAAGTTTATCCAACAGAGCATATAAAAATGAGTTTGAAAAGAGGAGGTGGGAGACCTGTAACTGTGGCTAACAATGATATGTCCAAAGGGAAAAGCATATCTGAACCTCAGCCAAAAGTTGAGCAGTTGACTCAGGGTATTGCTGATACTAAGCTAAACTCAGAACAAGATGATGGTGAGTGGGAGGTATATGCAAGGAAATCCAAGAACAAGGCTGGAAGCAGTGCTGCAAAACCATGGGGCCCCCCGGTCCATAATTCTAATCCTAGGGCATGGGGGAATGCTGAAATGGTTCAAAAGCCAGGCATCCGGAGTCATGGTGGAGTTGGAAGATCTTCTGGAAATCCCTGGCAGACACCAAATGCTAACTTTAGGAGACCAGCTGGCAGAGGAAATGGAAGGCCTCAATTAGGAACAAGTGGATATGAAAGCAACTATGTGACTCCAAATCCTGTAATTCGGCCTCCACTCGAGCATGGCTGGAACTGGCAATCCAGACCTGGTGCAATGCAGTCCAATGTAAGGGATGAAATTTCACCAGAGGACCTTCAAAAGAATTATGGTGTTGATGATGATGGGGAGGAGGAGGAATCTGATGATTTGGAAGATACTGATGATGATCTGATGAGTGATGACGATGATTCTGATGCTAGTCAAAAGAGTCATGAGACACGTAAGAAAAGCAAATGGTATAAGAAGTTCTTTGAGATTTTGGATGGCTTGACTGTTGAACAGATAAACGAACCAGAAAGACAGTGGCATTGTCCAGCTTGCCAAGGTGGTCCTGGAGCTATTGATTGGTACAGAGGACTGCAGCCCTTGGTGACACATGCCAAAACAAAGGGATCAAAAAGGGTGAAGATTCACAGGGAGCTTGCTATACTTTTGGATGAGGAATTACGCAGAAGGGGTACTTCAGTAATTCCAGCTGGGGAAGTATTTGGAAAGTGGAAAGGTTTGAAAGAAGAAGAAAAGGACCATGAGATAGTTTGGCCTCCAATGGTTGTCATTCAGAATACAAAGCTTGAACAGGATGAAAATGATAAGTGGATAGGTATGGGTAACCAAGAACTTCTTGATTATTTTAGCACATATGCTGCTGCAAAAGCACGGCACTCTTATGGCCCACAGGGTCATCGTGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTAGTGGCTATCTAGAGGCAGAGCGTCTCCACAAGCATTTTGCAGAGCAAGGAACTGATAAAGATGCTTGGTTCAATCGCCCTATTTTATATCTACCTGGGGGGAATCGCCAGCTCTATGGATACATGGCTACAAAAGAAGATCTGGACTTTTTCAACAGGCATTCCCAAGGTAAATCTAGACTCAAATATGACATAATGTCATATCAGGAGATGGTTGTACACCAAATTCGGCAAATGAATGAAGACAACCAACAGCTGCTCTATTTTAAGGACAAGGCTGTGAAAGGTGCAAAACACACAAAAGCTCTTGAAGAATCTATTGGTATAATGTCTGAGAAGCTGCGGAAGACAATGGAGGAAAATCGCATTGTGAGGAGGAGAACTAAAATGCAACATGAAGAGACCAAAGAAGAGATGTATATGCAAGAACAATTCTTCAAAGACCAGATCAAAATCATTCATGATTCAAGGGATGCAAAGGAAGAAGATTTTGAGAAGATGCAACAGGAAGAGCGTGAGAAGGTGAAGCAGTCAAGTAGTACTGGTCATGTGAATGCTGAGGAATATAGACTCAAGGTGGAAGAGTATCTGAAATTTGTTGAGGTCCAAGATAAAGAAATGGAGAACTTTGTTGCTGAAAAGGAGAAACTGTTGCATGCTCATGGCATGGGTTATGCTGCAATGAAGCGGAGGCATTGGGAGGAAGAAGTTCAGTATGAGCAGAAGTTTGATGAGGAACTCGCCAACCTCATGGAAAAGTACTCCCCGTTGGAGAAGTTCAATGGTATCTAA 2022 0.4308 MKQRQLFFLFPINNILLRLEVYPTEHIKMSLKRGGGRPVTVANNDMSKGKSISEPQPKVEQLTQGIADTKLNSEQDDGEWEVYARKSKNKAGSSAAKPWGPPVHNSNPRAWGNAEMVQKPGIRSHGGVGRSSGNPWQTPNANFRRPAGRGNGRPQLGTSGYESNYVTPNPVIRPPLEHGWNWQSRPGAMQSNVRDEISPEDLQKNYGVDDDGEEEESDDLEDTDDDLMSDDDDSDASQKSHETRKKSKWYKKFFEILDGLTVEQINEPERQWHCPACQGGPGAIDWYRGLQPLVTHAKTKGSKRVKIHRELAILLDEELRRRGTSVIPAGEVFGKWKGLKEEEKDHEIVWPPMVVIQNTKLEQDENDKWIGMGNQELLDYFSTYAAAKARHSYGPQGHRGMSVLIFEASASGYLEAERLHKHFAEQGTDKDAWFNRPILYLPGGNRQLYGYMATKEDLDFFNRHSQGKSRLKYDIMSYQEMVVHQIRQMNEDNQQLLYFKDKAVKGAKHTKALEESIGIMSEKLRKTMEENRIVRRRTKMQHEETKEEMYMQEQFFKDQIKIIHDSRDAKEEDFEKMQQEEREKVKQSSSTGHVNAEEYRLKVEEYLKFVEVQDKEMENFVAEKEKLLHAHGMGYAAMKRRHWEEEVQYEQKFDEELANLMEKYSPLEKFNGI 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01971 673 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 43 666 IPR044287 GO:0031047|GO:0051607
Gma04g01971 673 MobiDBLite consensus disorder prediction 569 591 - -
Gma04g01971 673 Pfam XS zinc finger domain 274 312 IPR005381 GO:0031047
Gma04g01971 673 Pfam XS domain 345 458 IPR005380 GO:0031047
Gma04g01971 673 MobiDBLite consensus disorder prediction 87 170 - -
Gma04g01971 673 MobiDBLite consensus disorder prediction 190 242 - -
Gma04g01971 673 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 43 666 - -
Gma04g01971 673 MobiDBLite consensus disorder prediction 569 588 - -
Gma04g01971 673 CDD RRM_like_XS 348 458 IPR005380 GO:0031047
Gma04g01971 673 Gene3D XS domain 340 518 IPR038588 -
Gma04g01971 673 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01971 Gma-Chr4 50134659 50142557 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01971 - - gsj:114410013 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01948 05 40873887 40878865 Gma04g01971 04 50134659 50142557 PCT
Gma08g00054 08 468342 469246 Gma04g01971 04 50134659 50142557 PCT