Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1319 ATGTCTAACATGGAAGCTGATGTTGCCGAAATCCGCGGCTACGAGCTCCGCCTCATCCGCTGCACACTCTCTCCTTCTCCGGCGACACCATTGAATCCCGTATCTCAAAACGAATTCACAGATGACCTCGTCAACAAGCTCCTGGACTCAATCGAGTCTGGCAATTATGCTGAAGCACTCACCTCCCAATCCTGCAGACTTATCTTTCAACTCAGCTCCAACTTTCCGCCACCGATTTCCGCCGACACTTTCTACTCCGAGTTGGTCGACCGCGCCGAGTCTTTTATAACTGATGTCTCAGTTAGCCCCGTCGAACAGGCTCGAAGATCCACCCTCGTGTTGTGTATTGCCGTTGCTGCGTTTCTAGGGTTCACTCAATGTAATTTCACAGGGCCATTGAAGGAGAAAGTGCTACCGAGATTCCCTCTGCCTCTGGTTGAATTTGAATGTGCAGAATGGGACATTTGGGCGCGTAATTATCTTATGTCTGATGGTTCTGATTTGCTTGGGAAGTTCTCCAATCTTCAGTATATTGTTTTTGCTAAGATGTTGCTCATGAGGATGAAAGATTTATCAGTTGATATTAGAAGCCTTACTTGGTGGCTTGGAAGGGTTTTGCTTCTTGAACAAAGAATTTTGGATGAACGGTCTTCTACCCTTTTTGATCTCTTGCATGCTTATATGGGTGAAGCCTTACAACAATTTGGCACTTCAGAACAAGTTCAGAGCTATTGGAAAGTTGGTTTGCTTGACGGAGAGAGCTTGGCAATTGTCTCCTTGCTTCATTTAGAGGCTGGAATTATGGAATATGTATATGGACGAGTTGATCCTTGTAGGACACGTTTTGAGTCAGCTGAGATGGCAGCTGGGCTTCAGCTATCAGTGACTGGAGCACTTGGTTTCCGTACCATACATCAGGTTGAACCAAAGGCACAGATGGTACTTGTTGCATGCTCAAATTCGTCAAACAGCGAGGACAACCGCTCCTTAACAGGAACTGGCATCCAAGCATGTGATGGAAGCAATGGTGGAAATAATTTACGTCAGCATCAAGCATCTGAAGCATCTGACATACTTGTAATACCAAAGCTGTTAGAAAACACTGATGACTCTAAGTCTAGGTCACAAGGCATGGAAAATGGTGCTGCTGTCACTTCCAACTTGACAGCAACACAGCAGGCTGTAGTTCTAGCACATTGCCTTCTAATTGAGAAGAGTTCCCGACACGATGAATTGCAACGATGGGATATGGCTCCTTACATTGAGGCAATTGATTCCCAGCAGTTCTCTTACTTCATTATACGATGCTTCTGCGATATCTTGCGTATTAGATGGGAGTCATTGCGTAGTCGAACGAAGGAGCGTGCATTACTGATGATGGATAACTTAGTGAAGCATATATATGAATCTTCTCCAGAAATTGCAGAAAGAATTCCTTTTAGTTATGGTGTTTATATGGCTAGTATTCCTGCTTTGAGAAAGGAATATGGTGAACTTTTGGTACGTTGTGGCTTGATAGGGGAGGCAATAAAGGAGTTTGATGATTTAGAATTATGGGACAATCTTATACACTGCTACAGTCTCTTGGAGAAGAAAGCATTAGCTGTTGATCTCATAAAGAAGCGTCTTTTAGAAAGGCCAAATGACCCCAGGTTATGGTGCTCATTGGGTGACATATCCATTGATGATGCTTGCTATAAAAAAGCTCTGGAAGTTTCAAACAATAGGTCTGCTAGAGCTAAGCGCTCTCTGGCCCGCAGTGCATACAATAGAGGAGACTACGAGACGTCTAAAACTTTATGGGAGTCTGCAATGTCAATGAACTCTATGTATCCAGATGGTTGGTTTGCATTTGGGGCTGCTGCATTGAAGGCACGGGATGTTGACAAGGCTCTAGATGCATTTACTCGTGCTGTTCAGCTCGATCCCGAAAATGGGGAAGCTTGGAATAACATAGCTTGCTTACATTTGATAAAGAAAAAGAGCAAGGAGGCCTTTATTGCATTTAAAGAAGCACTGAAGTTCAAACGAAACAGCTGGCAACTATGGGAGAATTACAGCCATGTTGCTGTTGACGTTGGTAATATCAGTCAGGCACTGGAAGGCGCTCAGATGGTTTTGAACATGACTAAAAATAAAAGAATAGATACAGTTTTATTGGAACGAATCACAAATGAGGTGGAAAAGCGGCTTTCTACAAGTAATTTTGTACCTCCTGTGACAACTGATAATAAGGCTAACACAGATCAAATCTGTACGGTTGATTCTGGATCAGAACCTCAAGAGCAAGTATCTGGACTACATGTTGCAGGAAGTACGCGTGAAACTGAACAATTAATATCATTGCTTGGGAACGTTTTACAGCAGATAGTTAAAAACGGGAGTGGATATGGACCTGATATCTGGGGCTTATATTCCAAATGGCACAGAATTAAGGGAGATCTCACGATGTGTTCTGAAGCCCTCTTAAAGCAAGTTCGATCACTCCAGGGTTCCGATACATGGAATTACCGAGATCGCTTCCAAAAGTTTGCAAAAGCATCTTTGGAACTCTGCAAGGTGTACATGGAAATATCTGCATCGACTGGAAGTATGAAAGAATTGTTTACAGCTGAGATGCACTTGAAGAATATTTGCAGACAGGGTCAGAGCTTCTCCGACACAGAAGAATTCAAAAATATTCAGGCTTGTCTTGATGAAGTGAAAATTAAACTCCAATCCAATGCCTAG 2730 0.4315 MSNMEADVAEIRGYELRLIRCTLSPSPATPLNPVSQNEFTDDLVNKLLDSIESGNYAEALTSQSCRLIFQLSSNFPPPISADTFYSELVDRAESFITDVSVSPVEQARRSTLVLCIAVAAFLGFTQCNFTGPLKEKVLPRFPLPLVEFECAEWDIWARNYLMSDGSDLLGKFSNLQYIVFAKMLLMRMKDLSVDIRSLTWWLGRVLLLEQRILDERSSTLFDLLHAYMGEALQQFGTSEQVQSYWKVGLLDGESLAIVSLLHLEAGIMEYVYGRVDPCRTRFESAEMAAGLQLSVTGALGFRTIHQVEPKAQMVLVACSNSSNSEDNRSLTGTGIQACDGSNGGNNLRQHQASEASDILVIPKLLENTDDSKSRSQGMENGAAVTSNLTATQQAVVLAHCLLIEKSSRHDELQRWDMAPYIEAIDSQQFSYFIIRCFCDILRIRWESLRSRTKERALLMMDNLVKHIYESSPEIAERIPFSYGVYMASIPALRKEYGELLVRCGLIGEAIKEFDDLELWDNLIHCYSLLEKKALAVDLIKKRLLERPNDPRLWCSLGDISIDDACYKKALEVSNNRSARAKRSLARSAYNRGDYETSKTLWESAMSMNSMYPDGWFAFGAAALKARDVDKALDAFTRAVQLDPENGEAWNNIACLHLIKKKSKEAFIAFKEALKFKRNSWQLWENYSHVAVDVGNISQALEGAQMVLNMTKNKRIDTVLLERITNEVEKRLSTSNFVPPVTTDNKANTDQICTVDSGSEPQEQVSGLHVAGSTRETEQLISLLGNVLQQIVKNGSGYGPDIWGLYSKWHRIKGDLTMCSEALLKQVRSLQGSDTWNYRDRFQKFAKASLELCKVYMEISASTGSMKELFTAEMHLKNICRQGQSFSDTEEFKNIQACLDEVKIKLQSNA* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1319 909 Gene3D Tetratricopeptide repeat domain 460 724 IPR011990 GO:0005515
Psa5g1319 909 ProSiteProfiles TPR repeat profile. 612 645 IPR019734 GO:0005515
Psa5g1319 909 Pfam Tetratricopeptide repeat 617 675 - -
Psa5g1319 909 SMART tpr_5 516 549 IPR019734 GO:0005515
Psa5g1319 909 SMART tpr_5 646 679 IPR019734 GO:0005515
Psa5g1319 909 SMART tpr_5 578 611 IPR019734 GO:0005515
Psa5g1319 909 SMART tpr_5 612 645 IPR019734 GO:0005515
Psa5g1319 909 SUPERFAMILY TPR-like 495 608 IPR011990 GO:0005515
Psa5g1319 909 ProSiteProfiles TPR repeat region circular profile. 612 645 - -
Psa5g1319 909 PANTHER UNCHARACTERIZED 36 902 IPR044244 -
Psa5g1319 909 SUPERFAMILY TPR-like 575 701 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1319 Psa-Chr5 102494112 102503465 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1319 K24935 - gmx:100803449 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1319 5 102494112 102503465 Psa5g1319 5 102494112 102503465 ECH