Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02672 ATGGCGCCGCCGACGGCCGCAGCTCAAGGCGGCCAGGCACCGCAAGGGAGACAACAGCAACAACAAGGAGGCTTTGGCCTCACCGGAATTATCCGCATGGCGGTTTTCTGGTACTTCGCCTCCAAACTGTTCTCTCCTAAAAAACCTACCGAACCTTCTGCTCTCATCAACAATCTCTTCCAGAAAGGCCAACCACTGGACATGTGGTTATATATCTCTGAGCGTGAGAAGTTCAACGACTTTGGTCGTGAAAGTGCTCTTGTTTGGCATGAAACCAATATTCCATATGCTGTTTGGGGACCTGAGAGTACCAGGACTCTTACTTTGAAGTATCACGCATCTGAGGCTTTGAAGAACAATGGGAGTCTGTATGCTCATGTTTTCTTTGCACATTCTGGATACTCGCCTGACCCAAGTGATCCAGAATACCAACCTCAAGCAGCATTTGGAAGAACACATCCTATTGTGATATACTTGCCCAAGTCGAAAGCAGATAAAAAGAAAAGTCTATTGGGGAATTCACCGGATTCTATTGAGGGCCAAGCGACATCCAAGGTGGTTGATGATACTGAAGATGATTCTAAGGATGAAGGCCCTGTCGAGTGGGTTTCATATTGGAAACCAAATATAACTATAAACTTGGTTGCTGACTTCACACAGTATCCAAAAACAGGCATACCACCAAACATTGCTCCATACATGAATATCGATCCTTTCACTGGGAACTACTATCCAACTGTCTTTTTCAATGAGTTCTGGTTACTCAGGGATAAGTTGATAGCTTTGAATGAGACAGTAACCGAGTTACCACTTAATCTGGAGGTTGGTCCCATTAGTATGACAAAGTGGCAATTATTCATGCAGATCGACCAGTCATTTCAGATTCATCGTAATTATGGAAGCATGCTTGAAGGCGAAGCTGATGAATTAAAGAGGGTATTCTTGGAAGGAAATCCTTACCTCCTGGGAGTTACGATGATCGTATCTTTACTTCATTCTGTTTTTGACTTCTTGGCTTTCAAGAATGATATCCAATTTTGGAACAAAAATAAATCCATGGAGGGACTGTCTGCAAAGACAGTTGTTGTGAGCTTTATTTGTCAGCTTATTATCTTCCTTTATCTGCTTGACAATGACACCTCCTGGATGATTCTTGCAAGCTCTGGAATTGGTGTTGTTATTGAGTTCTGGAAAATTGGAAAAGCCATGCGTATAGAGATTGATAGGACAGGAAAGATACCTATGTTGAGGCTCCGAGATCGAGAGTCATATGTAAGGAACAAGACAAAGGAGTATGATGATATTGCAATGAAGTATTTATCCTATGTTCTATTTCTCCTTGTTGCTGGCTTCTCCATTTACTCATTGATGTATGAGCGTCACAAGAGTTGGTATTCTTGGATTTTGTCTTCACTCACAAGCTGTGTCTACATGTTTGGTTTTATTATGATGTGCCCTCAGTTGTTCATCAACTACAAGCTTAAATCTGTTGCTCATCTACCTTGGAGACAAATGACTTACAAGTTCCTCAATACCATCATTGATGATCTTTTTGCCTTTGTCATCAAAATGCCAACACTACATCGTCTCTCTGTCTTCCGCGATGATCTCATCTTCCTCATATATTTATACCAACGGTGGATCTATCCAGTGGATAAGAAACGTGTAAATGAGTTTGGTTTTGGAGGCGAGGATGACGATCAGGCTGTAGAATCTTCAGAGTGTGTATGCCACACACACACAAAGGCACTAAACTCCAATTTCTATTTTTACTTTTTCTACATTCATAACATTATACTTTCTCTCTCCAACTCACAACTCTTCCCACAAGCTCCTCAACTGTCCTACAGAGGAGGAGCTGCCAAGGGTAGAATCATGGATAGCACCCAAAAGGGAGCCCTTATAAGCAATGAAGGTCTTAAAGATTTACCACTCATGGAACTGCAGCAATACAGGAATAACCAAAGAAAGTTAAGCTCTAGTCGAGAAGAGATTCATGATCAATCTCGCTGCCTTATCTGCACACGGGACAACAGTTGTCAAACAGTTTATTCAAGAACCAAACTGATGAATACTTTGATTGGAAGGGGGAAGCCACAGGAAGCTCAGTCCATCTTCAATAGTTTAACAGAACAAGGACATAGGCCAACTCTTATAACATACACAGCTCTTGTGGCTGCCCTCACCCGCCAGAAGCGTTTCAAATCCATTAATTCGCTTCTTTCTAAAGTTGTAGAGAATGGAATGAAGCCTGATTCAATACTTCTCAATGCTATGATCAACGCCTTTTCCGATTCTGGCAAGGTTGATGAAGCCATGAAAATCTTTCAAAAGATGAAGGAGTATGGATGTAAACCTACAACTAGTACTTATAATACTCTCATTAAAGGATTTGGAGTTGCCGGAAGGCCTTCCGAAGCTATGAAATTGCTAGAGATGATGGGTCAGGATGAAAATGTAAAAGCTAACGAGAGAACATATAATATTCTCAACCAAGCCTGGTGCACCCAGAAGAATCTTGAAGAGGCATGGAATGTTATGTACAAGATGGTAGCGTCGGGCCTGCAGCCCGATGTTGTCACCTTCAACACGTTCGCAAGGGCTTATGCTCAGAATGGTGAGACAGAAAAGGCGGAAAGGTTGATATTGAAAATGAAGTACAATAGAGTGAGACCTAATGAACGAACTTGTGGTATCATAATAAGCGGTTATTGTAAAGAAGGCAATATGACAGAGGCCTTGAGGTTTCTTTACAGAATGAAGGAGCTTGGAGTTCAACCGAATCTTGTCATTTTCAACTCTCTAATCAAAGGATATTTAGACATTACAGACACAAATGGGGTAGATGAGGCACTAACATTGATGGAAGAATTTGGGATAAAACCAGATGTGGTGACATTTAGTACCATCATGAATGGATGGAGCTCAGCAGGTCTTATGAAAAATTGCGAGGAGATATTCGAAGACATGGTGAAGGCTGGGATAGAGCCTGATATCCACGCATACAGCATCCTTGCAAAAGGTTATGTGCGTGCTGGACAGCCACGAAAAGCCGAGGCTCTTCTGGCTTCCATGAGAAAATATGGTGTCCATCCAAATGTTGTGATCTTTACTACCATCATCAGTGGATGGTGTGCCGCAGGAAGAATGGACCGTGCTGTTAAACTCTATGACAGAATGCATGAAATGGGAACTCCGGCAAACTTGAAAACTTATGAGACTTTAATATGGGGATATGGAGAAGCAAAACAACCTTGGAAAGCAGAAGAATTACTTGTTATCATGGAAGGGAGGGGTGTTGCCCCAGAAACAACCACCATACAACTGGTTGCTGATGCTTGGCGCGCCATTGGTTTTTCCAAGGAAGCCAAGAGAATTCTAAATGCTTTAGAAGACGACACTGAGCTGGATCAGAATCTTGAAGTCAACAAGATACCGATTCAAAGCTTGGACAGGATTTATAATAAAGAGCAACTCAGTGATTCCCACTCTAATCCACTGCAGATGCCTGATGTATTGGTAACTCATCCAGGGAGAACAATGAATGGCAACATAAGAAGCAAAATGATAGTCAATGCATCTGTCATTTCGCAGAAGGCTACCACTTGCATTGTTTTCGTTCGAACAAGTTCATACAGGGTTCAGCCACTTACTGTAAGTAAGCAGCAAACTCAAAACAACATTTATAGGCCCCTCCTTGAATGTTGCAGGGCAGTGCCAATACATTGTTAA 3732 0.4204 MAPPTAAAQGGQAPQGRQQQQQGGFGLTGIIRMAVFWYFASKLFSPKKPTEPSALINNLFQKGQPLDMWLYISEREKFNDFGRESALVWHETNIPYAVWGPESTRTLTLKYHASEALKNNGSLYAHVFFAHSGYSPDPSDPEYQPQAAFGRTHPIVIYLPKSKADKKKSLLGNSPDSIEGQATSKVVDDTEDDSKDEGPVEWVSYWKPNITINLVADFTQYPKTGIPPNIAPYMNIDPFTGNYYPTVFFNEFWLLRDKLIALNETVTELPLNLEVGPISMTKWQLFMQIDQSFQIHRNYGSMLEGEADELKRVFLEGNPYLLGVTMIVSLLHSVFDFLAFKNDIQFWNKNKSMEGLSAKTVVVSFICQLIIFLYLLDNDTSWMILASSGIGVVIEFWKIGKAMRIEIDRTGKIPMLRLRDRESYVRNKTKEYDDIAMKYLSYVLFLLVAGFSIYSLMYERHKSWYSWILSSLTSCVYMFGFIMMCPQLFINYKLKSVAHLPWRQMTYKFLNTIIDDLFAFVIKMPTLHRLSVFRDDLIFLIYLYQRWIYPVDKKRVNEFGFGGEDDDQAVESSECVCHTHTKALNSNFYFYFFYIHNIILSLSNSQLFPQAPQLSYRGGAAKGRIMDSTQKGALISNEGLKDLPLMELQQYRNNQRKLSSSREEIHDQSRCLICTRDNSCQTVYSRTKLMNTLIGRGKPQEAQSIFNSLTEQGHRPTLITYTALVAALTRQKRFKSINSLLSKVVENGMKPDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGVAGRPSEAMKLLEMMGQDENVKANERTYNILNQAWCTQKNLEEAWNVMYKMVASGLQPDVVTFNTFARAYAQNGETEKAERLILKMKYNRVRPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVQPNLVIFNSLIKGYLDITDTNGVDEALTLMEEFGIKPDVVTFSTIMNGWSSAGLMKNCEEIFEDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLASMRKYGVHPNVVIFTTIISGWCAAGRMDRAVKLYDRMHEMGTPANLKTYETLIWGYGEAKQPWKAEELLVIMEGRGVAPETTTIQLVADAWRAIGFSKEAKRILNALEDDTELDQNLEVNKIPIQSLDRIYNKEQLSDSHSNPLQMPDVLVTHPGRTMNGNIRSKMIVNASVISQKATTCIVFVRTSSYRVQPLTVSKQQTQNNIYRPLLECCRAVPIHC 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 787 821 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1068 1102 IPR002885 -
Adu08g02672 1243 PANTHER CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED 4 567 IPR008429 GO:0016021
Adu08g02672 1243 SUPERFAMILY HCP-like 761 927 - -
Adu08g02672 1243 MobiDBLite consensus disorder prediction 169 198 - -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 717 751 IPR002885 -
Adu08g02672 1243 Gene3D Tetratricopeptide repeat domain 832 944 IPR011990 GO:0005515
Adu08g02672 1243 Pfam Cleft lip and palate transmembrane protein 1 (CLPTM1) 29 458 IPR008429 GO:0016021
Adu08g02672 1243 Gene3D Tetratricopeptide repeat domain 945 1204 IPR011990 GO:0005515
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 998 1032 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 928 962 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 963 997 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 823 857 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 896 928 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 1035 1067 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 790 823 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 965 999 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 1001 1034 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 756 787 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 826 859 IPR002885 -
Adu08g02672 1243 TIGRFAM PPR: pentatricopeptide repeat domain 860 893 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1033 1067 IPR002885 -
Adu08g02672 1243 Pfam PPR repeat family 962 1010 IPR002885 -
Adu08g02672 1243 Pfam PPR repeat family 751 798 IPR002885 -
Adu08g02672 1243 Pfam PPR repeat family 857 906 IPR002885 -
Adu08g02672 1243 Pfam PPR repeat family 1032 1079 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 752 786 IPR002885 -
Adu08g02672 1243 PANTHER BNAA09G05230D PROTEIN 4 567 - -
Adu08g02672 1243 Gene3D Tetratricopeptide repeat domain 644 817 IPR011990 GO:0005515
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 858 892 IPR002885 -
Adu08g02672 1243 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 893 927 IPR002885 -
Adu08g02672 1243 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02672 Adu-Chr8 42918341 42927063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02672 682 833 Glycosyltransferase AT1G05670 23.026 5.42e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02672 - - gmx:100804885 1046.96