Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0366 ATGAGTTCTAAAAGAGGGGGTGGGAGATCTTTGCCTATAGCCAACAATGATATGTCCAAAGGGAAAAGCATAACCGAATCTCATCCAAAAATTGAGCAGTTGACTCAGGGTATTGCTGACACTAAGCTAGATTCAGGACAAGATAATGGTGAGTGGGAGGTATATGCAAGGAAATCCAAGAACAGAGCTGGAAGCAGTGCTACAAAACCATGGGGGGGCCCAGCCCATAATTCTAATCCTAGGGCATGGGGGAATACTGATACAGTCCAAAAGTCAAGCATTCAGAGTCATGGTGGAGTAGGAAGAGCTTCTGGAAATCCCTGGCAGACACAAAATGCTAACTTTAGGAGACCAGCAGGCAGAGGAAATGGAAAGCCCCAGTTCGCAACAAGTGGATATGAAAGCAACAATGTGACTCCAAATCCTTTAATTCGGCCTCCACTGGAGCATGGCTGGAATTGGCAATCTAGAGCTGGTGCAATGCAGTCCAATGTAAAGGCTGAAATTATGCCAGAGGACCTGGAAAAGAATAATGATGTTGATGATGATGATGACGAGGAGGAGGAGGAGGACTCTGATGCTACAGAGGATACTGATGATGATCTAATGAGTGATGACTATGAGTCAGACACTAGTCAAAAGAGCCATGAGACACGCAAGAAGAACAAATGGTTTAGGAAATTCTTTGAGATTTTGGATGGCCTGACTGTTGACCAGATAAATGAACCAGAAAGACAGTGGCATTGTCCAGCTTGTAAAGGTGGTCCTGGTGCTATTGATTGGTACAAAGGCCTGCAGCCCCTGGTGACACATGCCAAAACAAAAGGATCAAAAAGGGTGAAAATCCACAGGGAGCTTGCTGTCCTTTTGGATGAGGAATTGCGCAGAAGGGGTACTTCAGTAATTCCAGCTGGAGAAGTATTTGGTAAGTGGAAAGGTTTAAAAGATGAAGAGAAAGATCATGAAATTGTTTGGCCTCCGATGGTTGTAATTCAGAATACAAAGCTTGAACAGGATGAAAATGATAAGTGGATAGGTATGGGTAACCAAGAACTTCTTGATTATTTTAGCACATATGCTGCTGTGAAAGCACGACACTCTTATGGCCCACAGGGTCATCGTGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTGGTGGATATCTAGAGGCAGAGCGTCTGGACAAGCATTTTGCAGAGCAAGGAACTGATAAAGATGCTTGGTTTAATCGCCGTATTTTATATCTCCCTGGGGGGAATCGCCAGCTCTATGGATACATGGCTACTAAAGAAGACCTCGACTTTTTCAATAAGCATTGCCAAGGTAAATCTAGGCTCAAATATGACATGAGATCATATCAGGAGATGGTTGTACACCAAATTCGTCAAATGAGTGAGGACAACCAGCAACTTCTCTATTTTAAGAACAAGGCTGTCAGAGGAGCAAAACACACAAAAGCTCTTGAAGAATCTATTGGTATAATGTCTGAGAGGCTGCGGAAGACAATGGAGGAAAACCGCATTGTGAGGCGGAGAACTAAAATGCAACATGAAGAGACCAAAGAAGAGATGTATATGCAAGAACAATTTTTCAAGGACCAGATCAAAATCATTCATGATTCAAGGAATGCAAAGGAAGAAGATTTTGAGAGGTTGCAGCAGGAGGAACGTGAGAAGGTGAAGCAGTCAAACACTGGCCCTTTAAATACTGAGGAATGGAGGCTCAAGGCGGATGAGTATCTAAAATTTGTTGAGGTCCAAGATAAAGAAATGGAGCACTTTGTTACTGAAAAGGAGTTACTATATCGTGTACATGCAGAGAGTATTGTTGCAATGAAGCGGAGGCATTGGGAGGAAGAGGTGCTGTTGGAGAAGAAGTTTGATGAGGAACTAGCCAAACTCATGGAAAAGTACTCCCCATCTCACCCAGATGATAAGTCCAATGGAATCTAA 1953 0.4327 MSSKRGGGRSLPIANNDMSKGKSITESHPKIEQLTQGIADTKLDSGQDNGEWEVYARKSKNRAGSSATKPWGGPAHNSNPRAWGNTDTVQKSSIQSHGGVGRASGNPWQTQNANFRRPAGRGNGKPQFATSGYESNNVTPNPLIRPPLEHGWNWQSRAGAMQSNVKAEIMPEDLEKNNDVDDDDDEEEEEDSDATEDTDDDLMSDDYESDTSQKSHETRKKNKWFRKFFEILDGLTVDQINEPERQWHCPACKGGPGAIDWYKGLQPLVTHAKTKGSKRVKIHRELAVLLDEELRRRGTSVIPAGEVFGKWKGLKDEEKDHEIVWPPMVVIQNTKLEQDENDKWIGMGNQELLDYFSTYAAVKARHSYGPQGHRGMSVLIFEASAGGYLEAERLDKHFAEQGTDKDAWFNRRILYLPGGNRQLYGYMATKEDLDFFNKHCQGKSRLKYDMRSYQEMVVHQIRQMSEDNQQLLYFKNKAVRGAKHTKALEESIGIMSERLRKTMEENRIVRRRTKMQHEETKEEMYMQEQFFKDQIKIIHDSRNAKEEDFERLQQEEREKVKQSNTGPLNTEEWRLKADEYLKFVEVQDKEMEHFVTEKELLYRVHAESIVAMKRRHWEEEVLLEKKFDEELAKLMEKYSPSHPDDKSNGI* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0366 650 MobiDBLite consensus disorder prediction 168 216 - -
Apr1g0366 650 MobiDBLite consensus disorder prediction 546 562 - -
Apr1g0366 650 MobiDBLite consensus disorder prediction 128 142 - -
Apr1g0366 650 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 15 641 - -
Apr1g0366 650 Gene3D XS domain 315 493 IPR038588 -
Apr1g0366 650 Pfam XS domain 320 433 IPR005380 GO:0031047
Apr1g0366 650 MobiDBLite consensus disorder prediction 79 117 - -
Apr1g0366 650 MobiDBLite consensus disorder prediction 175 206 - -
Apr1g0366 650 MobiDBLite consensus disorder prediction 16 43 - -
Apr1g0366 650 CDD RRM_like_XS 323 433 IPR005380 GO:0031047
Apr1g0366 650 Coils Coil 542 562 - -
Apr1g0366 650 MobiDBLite consensus disorder prediction 546 566 - -
Apr1g0366 650 MobiDBLite consensus disorder prediction 1 150 - -
Apr1g0366 650 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 15 641 IPR044287 GO:0031047|GO:0051607
Apr1g0366 650 Pfam XS zinc finger domain 249 287 IPR005381 GO:0031047
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0366 Apr-Chr1 4535060 4541893 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0366 - - gmx:100792019 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0366 1 4535060 4541893 Apr1g0366 1 4535060 4541893 ECH
Apr2g1100 2 17321390 17325911 Apr1g0366 1 4535060 4541893 PCT