Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g01219 ATGCTTCAACGCAATTTCAAGACATGGGCTTCCATCATTAGGAGCTTATGTGTAGATTCCAGACACAATGAAGCTTTGTCTTTTTACCAACATTGCTTGAAGGATAGTGCAGCTTTTAAACCAGATCATCAAGTCCTTGCTGCAATTCTCAAGTCTTGTTCAGCACTTTTGGCTTCCAACTTGGGAAAATGTCTGCATAGTTGTGTTGTTAAACAAGGTCATGATTCTTGCCATTTTACGAATAAAGCATTGCTTAACTTGTATGCCAAATGTGGCTTGCTTGATGATTGTCAAAAGATGTTTGATCAACTCGGTCACTGTGATCCTGTTATTTGGAACATTGTTTTATCTGGATTTTCAGGGTCTAGTAAACATGATACTGATGTGATGAGGGTGTTTAGGACAATGCATTCGAGTGGAGAGGCTATGCCGAATTCTGTTAGTGCTGCTATTGTTCTTCCTGTTTGTGCTCGTATGGGGAATCTGAATGCTGGAAAGAGTATGCATGGTTATGCTATCAAATCGGGTTTTGAAGTGGACACATTTGCTGGAAATGCTCTTGTATCAATGTATGCAAAGTGTGGATTTGTGTCTcgtgatgcatatgatgtctttgaTAGCATTATTCACAAAGATGTTGTTTCGTGGAATGCGATGATTGCAGGTCTTGCTGCGAATGGGTTGTTAGAAGAAGCATTTTCATTGTTCAGTTTGATGGTGAAAGGACCTATACAGCCAAATTATGCAACTGTAGCCAATATTCTGCCTGTTTGTGCTTTGTTCGATGAGAATGTTGCCTACCGTTGTGGAAGGCAGATCCACTCTTATGTGCTGCAGTGGCCTGAATTGTCGATTGATTGGCCTGAATTGTCGATTGATGTTTCTGTATGTAATGCTTTGATGAGCTTCTACCTAAAAGTTGGACGGACAAAAGTAGCTGAATATTTGTTTTGGGCAATGGATGCAAGGGATTTGGTTTCTTGGAACGCAATTATTGCAGGATATACATCGAATGGTGAATGGTTCAAAGCGTTGCATGTATTTGGTAATTTAGTGTCTCTAGAGACGTTATTATTGGATTCTGTGACCATGGTCAGCATACTTCCAGCATGTGCACAATTGGAAAACTTGAAGGTGGGGAAAGAAATCCATGCATATATTTTCAGACatccttttctttttgaagataCTTCTGTTGGAAACGCTTTAGTTAGTTTCTATGCAAAATGTGGCTATATAGAAGAAGCATATCACACGTTTTCTATGATATCTAGGAAAGATTTGATTTCATGGAATTCTATTTTGGATGCCTTTGGAGAGAAGAGGCATCATTCAAGATTTCTCAGCCTGTTACATTTGATGCTTAAACTAGAAGTCAGACCCGATTCTGTTACAATATTGTCCATAATCCATTTTTGTGCTTCTCTGTTGAGAGTAGAAAAGGTGAAAGAAATACACTGCTATTCAATTAGGACTGGATCATTATTAAGTGCTACTGCGCCGCCAACTGTTGGGAATGCAATACTTGATGCATATTCCAAATGTGGTAACATTGAGTATGCAAATAAAATGTTTCAAAATCTGTCAGAAAAAAGGAATCTGGTCACATGCAATTCATTGATATCAGGTTATGTGGGTTTAGGATCACATCATGATGCTAATATGATATTTAGTGGGATGTCAGAGACAGACCTTACCACCTGGAATCTAATGATTCGAGTATATGCCGAAAATGATTGTCCTGAGCAAGCTATTGGATTGTTCTCAGAGTTACAAGCTCGAGGGATGAAGCCTGATGTGGTGACTATCATGAGCCTCCTCCCAGTATGCACACAAATGGCGTCAGTTCACTTACTGAGCCAGTGTCACGGTTACATTATACGGTCTAGTTTTGAGGATCTCCATCTTAAAGGAACCCTCTTAGATGCATATGCAAAATGTGGCATCATAGGCTGTGCATATAAGATATTTCAATCGAGTGCTGATAAGGATCTGGTTATGTTTACTTCTATGATTGGTGGGTATGCTATGCATGGTATGAGTGAAGAAGCACTTGGGACTTTTTCTCACATGCTCAATTTGGGAATCAAGCCAGATCATGTTATCTTCACTTCCATATTATCGGCTTGCAGTCACGCTGGCCGCATAGACGAAGGACTGAAGATATTTAATTCAATCGAGAAAGTCTATGGTATGAAACCAACTATGGAACAATATGCTTGCGTGGTGGATCTCCTCGCTCGAGGTGGCCGCATTAGTGAAGCATATTCTTTTGTGACTAGGATGCCAATGGAAGCTAATGCAAATATCTGGGGGACGTTGCTTGGTGCCTGCAAAATCCATCATGAGGTTGAATTGGGTCGGATTGTAGCAGACAAACTCTTCAAAATTGAAGCTAATGATATTGGAAACTACATTGTATTGTCAAATTTGTACGCAGCAGATGGTAGATGGGATGAGGTAACAGAAGTAAGAAAGACGATGAGGAACAAAGATTTGAAAAAACCAGCAGGATGCAGCTGGATCGAAATTGAGAGGACAAATAACATTTTTGTGGTTGAAGATTGTTCCCACCCACAAAGAAGCTTAATTTACAGTACATTGTATACATTGGATCAACAAGTAAAAGAACCGGTGGAATTTTAG 2646 0.3912 MLQRNFKTWASIIRSLCVDSRHNEALSFYQHCLKDSAAFKPDHQVLAAILKSCSALLASNLGKCLHSCVVKQGHDSCHFTNKALLNLYAKCGLLDDCQKMFDQLGHCDPVIWNIVLSGFSGSSKHDTDVMRVFRTMHSSGEAMPNSVSAAIVLPVCARMGNLNAGKSMHGYAIKSGFEVDTFAGNALVSMYAKCGFVSRDAYDVFDSIIHKDVVSWNAMIAGLAANGLLEEAFSLFSLMVKGPIQPNYATVANILPVCALFDENVAYRCGRQIHSYVLQWPELSIDWPELSIDVSVCNALMSFYLKVGRTKVAEYLFWAMDARDLVSWNAIIAGYTSNGEWFKALHVFGNLVSLETLLLDSVTMVSILPACAQLENLKVGKEIHAYIFRHPFLFEDTSVGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHLMLKLEVRPDSVTILSIIHFCASLLRVEKVKEIHCYSIRTGSLLSATAPPTVGNAILDAYSKCGNIEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLTTWNLMIRVYAENDCPEQAIGLFSELQARGMKPDVVTIMSLLPVCTQMASVHLLSQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGCAYKIFQSSADKDLVMFTSMIGGYAMHGMSEEALGTFSHMLNLGIKPDHVIFTSILSACSHAGRIDEGLKIFNSIEKVYGMKPTMEQYACVVDLLARGGRISEAYSFVTRMPMEANANIWGTLLGACKIHHEVELGRIVADKLFKIEANDIGNYIVLSNLYAADGRWDEVTEVRKTMRNKDLKKPAGCSWIEIERTNNIFVVEDCSHPQRSLIYSTLYTLDQQVKEPVEF 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 664 698 IPR002885 -
Tsu07g01219 881 PANTHER OS02G0290000 PROTEIN 479 878 - -
Tsu07g01219 881 PANTHER OS02G0290000 PROTEIN 378 476 - -
Tsu07g01219 881 PANTHER OS02G0290000 PROTEIN 90 377 - -
Tsu07g01219 881 PANTHER OS07G0578800 PROTEIN-RELATED 90 377 IPR045215 GO:0003723|GO:0009451
Tsu07g01219 881 Pfam PPR repeat 401 426 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat 326 351 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat 83 103 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat 535 561 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat 506 530 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat 429 457 IPR002885 -
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 734 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 666 699 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 535 564 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 567 600 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 701 735 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 326 351 IPR002885 -
Tsu07g01219 881 TIGRFAM PPR: pentatricopeptide repeat domain 429 462 IPR002885 -
Tsu07g01219 881 Pfam E motif 781 843 IPR046848 -
Tsu07g01219 881 PANTHER OS02G0290000 PROTEIN 8 93 - -
Tsu07g01219 881 Pfam PPR repeat family 663 710 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat family 564 607 IPR002885 -
Tsu07g01219 881 Pfam PPR repeat family 211 251 IPR002885 -
Tsu07g01219 881 PANTHER OS07G0578800 PROTEIN-RELATED 479 878 IPR045215 GO:0003723|GO:0009451
Tsu07g01219 881 PANTHER OS07G0578800 PROTEIN-RELATED 378 476 IPR045215 GO:0003723|GO:0009451
Tsu07g01219 881 Gene3D Tetratricopeptide repeat domain 5 140 IPR011990 GO:0005515
Tsu07g01219 881 Gene3D Tetratricopeptide repeat domain 637 860 IPR011990 GO:0005515
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 427 461 IPR002885 -
Tsu07g01219 881 PANTHER OS07G0578800 PROTEIN-RELATED 8 93 IPR045215 GO:0003723|GO:0009451
Tsu07g01219 881 Gene3D Tetratricopeptide repeat domain 494 622 IPR011990 GO:0005515
Tsu07g01219 881 Gene3D Tetratricopeptide repeat domain 282 386 IPR011990 GO:0005515
Tsu07g01219 881 Gene3D Tetratricopeptide repeat domain 387 488 IPR011990 GO:0005515
Tsu07g01219 881 Gene3D Tetratricopeptide repeat domain 156 276 IPR011990 GO:0005515
Tsu07g01219 881 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 564 598 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g01219 Tsu-Chr7 10507344 10510051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g01219 145 877 Glycoside Hydrolase AT3G49170 30.013 7.14e-104 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g01219 - - gmx:100783369 1459.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g01219 07 10507344 10510051 Tsu07g01219 07 10507344 10510051 ECH