Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal17g0801 ATGCTTCAACGCGATTTCAGGACATGGGGTTCCATGATCAAGACCTTATGTGCTGATTTAAGGCACAATGAAGCATTGTCCCTTTTCCATTATTCTTTTAAGGCTTATGCAGCTTTCAGATCAGATCACCTTGTCCTTGCTTCCATTCTAAAATCTTGCTCTATCCTTTTAGCTACCAACTTGGGCAGAAGTCTCCATAGTTATGTTGTTAAACTTGGCCATGTTTCTTGTAATGTTACGAACAAAGCGTTGCTTAATATGTATGCCAAATGTGGCAAGCTTGATGAATGCCATAAGCTCTTTGATCAGATTGGTCATTGTGATCCTGTTACTTGGAATATCCTTTTATCTGGGCTTTCAGGGTCCATGAAATATGATGCTCAAGTGATGAGGGTGTTTAGGATGATGCATTCGAGTGGTGAGGCTATGCCCACTTCTGTTACTGTTGCTACTACTCTTTCGGTGTGTGCTCGTTTGAGGGATCTAGATGCTGGAAAGAGTATACATGCTTATGTAATGAAGTCTGGTTTTGAAGCTGACACTTTAGCAGGAAATGCTCTTTTGTCGATGTATGCAAAGTGTGGACTGGTGTCCAATGATGCATATGCGGTCTTCGATGACATTGTTCACAAGGATGTTGTTTCGTGGAATGCAATGATTGCAGGCCTTGCTGAGAATGGATTTTTAGAAGATGCATTCACATTGTTCAGTTCAATGGTTAAAGGACCTGAGCAGCCAAATTATGCAACCATTGCGAGTATTTTACCTGTTTGTGCTTCATTCAATAAGGATGTTGCCTACCGTTGTGGAAGGCAAATTCACCCTTATGTGCTGCAACGAGCTGAATTGTCAGCCCATGTTTCTGTCACTAATGCTTTGATTAGCTTCTATGTAAAAGTTGGACATATGACAGAAGCAGAAACTATGTTTTGGGCAATGGATGTGAGGGATTTGGTCTCTTGGAATGCTATTATTGCGGGATACACATGGAATGATGAATGGTTAAAAGCATTGCACCTGTTACATAATTTAGTATCTCAAGAGATGTTATTGCCAGATTCTGTGACTATTGTCAGCATACTTCCAGCTTTAGCGCAATTGGGAAACTTGCAGTTGGGGAAACAGATCCATGCATATATATTTAGACGTCCTTTTCTTTTTGAAGATACTGCCACCGGAAATGCCCTGCTTAGTGTTTATGCAAAATGTGGCAGCAAAAAAGAAGCATATCATACGTTTTCAATGATATCCAGGAAAGATTTGATTTCATGGAATTCTATTTTGGATGCCTTTGGAGAGAAGAGGCATCATTCAAGATTCTTAAGCTTGTTACATTTGATGCTTAAACTAGGAATTAAACCTGACTCAGTTACAATATTGACCATAATTCATTTTTGTGTTTCTCTTTTAAGAGTAGAAAAGGTTAAAGAAATACACAACTATTCAATTAAATCTGGATCTCTACTAAGTGATACTGCACCAACAGTTGGGAATGCAATACTTGATGCATATTCCAAATGTGGTAACATGGAGTATGCTAATAAAATGTTTCAGACTCTATCAGAAAAAAGGAATCTGATCACATGCAATTCGCTGATTTCAGGTTATGTGGGTTTAGGATCACATCATGATGCAAATATGATATTTAGTGGGATGTCTGAGACAGACCTTACCACCTGGAATCTTATGATTCGAGTATATGCTGAAAATGATTGTCCTGAGCAAGCTGTCAAACTGTTCTCTGAGTTACAAGCTAAAAGGATGAAGCCCGATGCAATGACTGTCATGAGCCTTCTTCCAGTATGCATACAAATGGCATCACTGCACTTATTGAGTCAGTGTCATGGGTATATTATTCGATCTTGTTTTGAGGATCTTCACCTGAAAGGATCCCTCTTAGATGCATATGCCAAATGTGGCATCATAGGCTGTGCAAATAAGATATTCCAATCGAGTACTCGTAAAGATCTGGTTATGTTTACTGCAATGATTGGTGGGTATGCTATGCATGGTATGAGTGAAGAAGCACTTGATATTTTTTCTCATATGCTCGAAGTTGGAATCAAGCCAGATCATGTTATCTTCACTTCTGTATTATCTGCTTGTAGTCATGCTGGCCGTGTAGATGAAGGACTGGAAATATTTTGTTCAATAGAGAAAATCCATGGTATGAAACCAACTAAGGAACAGTATGCTTGCGTGGTGGATCTCCTATCTCGAGGCGGCCGCATTCATGAAGCATATTCTCTTGTGACCAGGATGCCAATTGAAGCTAATGCAAATCTTTGGGGGACATTGCTCGGTGCATGCAAAATCCACCATGAAGTTGAATTGGGGCGTATTGTAGCAGACCAACTCTTTAAAATCGAAGCTAATGATATCGGAAACTATGTTGTATTGTCAAATTTGTATGCATCAGAGGCTAAATGGGATGGGGTCATGGAGATCAGAAGGATGATGAGGGACAAAGATTTGAAAAAACCCGCAGGATGCAGCTGGATCGAAGTCGAGAGGACGAACAACATTTTTGTAGCTGGAGACTGTTCCCACCCACAAAGAAGCATTATTTATAATGCCAGGGGAAACAAGGAAAGCAACTCTGGTTACCAAGGATTTGGAGTAGAAGCACAAACTCAAGAGCCATATTAA 2649 0.3986 MLQRDFRTWGSMIKTLCADLRHNEALSLFHYSFKAYAAFRSDHLVLASILKSCSILLATNLGRSLHSYVVKLGHVSCNVTNKALLNMYAKCGKLDECHKLFDQIGHCDPVTWNILLSGLSGSMKYDAQVMRVFRMMHSSGEAMPTSVTVATTLSVCARLRDLDAGKSIHAYVMKSGFEADTLAGNALLSMYAKCGLVSNDAYAVFDDIVHKDVVSWNAMIAGLAENGFLEDAFTLFSSMVKGPEQPNYATIASILPVCASFNKDVAYRCGRQIHPYVLQRAELSAHVSVTNALISFYVKVGHMTEAETMFWAMDVRDLVSWNAIIAGYTWNDEWLKALHLLHNLVSQEMLLPDSVTIVSILPALAQLGNLQLGKQIHAYIFRRPFLFEDTATGNALLSVYAKCGSKKEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHLMLKLGIKPDSVTILTIIHFCVSLLRVEKVKEIHNYSIKSGSLLSDTAPTVGNAILDAYSKCGNMEYANKMFQTLSEKRNLITCNSLISGYVGLGSHHDANMIFSGMSETDLTTWNLMIRVYAENDCPEQAVKLFSELQAKRMKPDAMTVMSLLPVCIQMASLHLLSQCHGYIIRSCFEDLHLKGSLLDAYAKCGIIGCANKIFQSSTRKDLVMFTAMIGGYAMHGMSEEALDIFSHMLEVGIKPDHVIFTSVLSACSHAGRVDEGLEIFCSIEKIHGMKPTKEQYACVVDLLSRGGRIHEAYSLVTRMPIEANANLWGTLLGACKIHHEVELGRIVADQLFKIEANDIGNYVVLSNLYASEAKWDGVMEIRRMMRDKDLKKPAGCSWIEVERTNNIFVAGDCSHPQRSIIYNARGNKESNSGYQGFGVEAQTQEPY 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal17g0801 882 TIGRFAM PPR: pentatricopeptide repeat domain 693 726 IPR002885 -
Lal17g0801 882 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Lal17g0801 882 TIGRFAM PPR: pentatricopeptide repeat domain 422 456 IPR002885 -
Lal17g0801 882 TIGRFAM PPR: pentatricopeptide repeat domain 658 691 IPR002885 -
Lal17g0801 882 TIGRFAM PPR: pentatricopeptide repeat domain 527 556 IPR002885 -
Lal17g0801 882 TIGRFAM PPR: pentatricopeptide repeat domain 214 241 IPR002885 -
Lal17g0801 882 Pfam E motif 773 835 IPR046848 -
Lal17g0801 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Lal17g0801 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Lal17g0801 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 8 30 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 83 103 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 559 586 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 319 344 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 498 521 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 527 553 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 291 314 IPR002885 -
Lal17g0801 882 Pfam PPR repeat 422 452 IPR002885 -
Lal17g0801 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Lal17g0801 882 Pfam PPR repeat family 655 703 IPR002885 -
Lal17g0801 882 Pfam PPR repeat family 211 256 IPR002885 -
Lal17g0801 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 726 IPR002885 -
Lal17g0801 882 Gene3D Tetratricopeptide repeat domain 8 141 IPR011990 GO:0005515
Lal17g0801 882 Gene3D Tetratricopeptide repeat domain 628 855 IPR011990 GO:0005515
Lal17g0801 882 Gene3D Tetratricopeptide repeat domain 494 625 IPR011990 GO:0005515
Lal17g0801 882 Gene3D Tetratricopeptide repeat domain 383 493 IPR011990 GO:0005515
Lal17g0801 882 PANTHER OS02G0290000 PROTEIN 3 93 - -
Lal17g0801 882 PANTHER OS02G0290000 PROTEIN 471 859 - -
Lal17g0801 882 PANTHER OS02G0290000 PROTEIN 372 469 - -
Lal17g0801 882 PANTHER OS02G0290000 PROTEIN 91 370 - -
Lal17g0801 882 Gene3D Tetratricopeptide repeat domain 273 382 IPR011990 GO:0005515
Lal17g0801 882 Gene3D Tetratricopeptide repeat domain 149 272 IPR011990 GO:0005515
Lal17g0801 882 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Lal17g0801 882 PANTHER OS07G0578800 PROTEIN-RELATED 372 469 IPR045215 GO:0003723|GO:0009451
Lal17g0801 882 PANTHER OS07G0578800 PROTEIN-RELATED 3 93 IPR045215 GO:0003723|GO:0009451
Lal17g0801 882 PANTHER OS07G0578800 PROTEIN-RELATED 91 370 IPR045215 GO:0003723|GO:0009451
Lal17g0801 882 PANTHER OS07G0578800 PROTEIN-RELATED 471 859 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal17g0801 Lal-Chr17 5873996 5878033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal17g0801 135 858 Glycoside Hydrolase AT3G49170 29.932 3.39e-102 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal17g0801 - - gmx:100783369 1392.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal17g0801 17 5873996 5878033 Lal17g0801 17 5873996 5878033 ECH