Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1638 . . . . . . . . . . . . . . . . . . . Dod09g0047 . . Gma04g01982 Gma06g01433 . . . . . . . . . . . . . . . . . . . . . Phco7g01928 . . . . . . . Ssu1g2477 . . . . . . . . . .
Pvu9g1639 . . . . . . . . . . . . Arst8g03708 Bach2g02348 . Bva06g01615 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1641 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01925 . . . . . . . . . . . . . . . . . .
Pvu9g1642 . . . . . . . . . Amo08g2308 . . Arst3g03882 . . . . . . . . . . . . . . . . Lan15g0478 Lan14g0394 . . . . . . . . . . . . . . Phco7g01924 . . . . . . . . . . . . . . . . . .
Pvu9g1643 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan14g0393 . . . . . . . . . . . . . . Phco7g01920 . . . . . . . . . . . . . . . . . .
Pvu9g1644 . . . . . . Ahy8g2562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01919 . . . . . . . . . . . . . . . . . .
Pvu9g1645 . . . . Aev08g0554 . Ahy8g2564 Aip10g02433 . Amo08g2318 . . Arst10g02356 . . . . . . . . . . . . . . . . . . Lan3g0706 . Lasa5g03475 . . . . . . Mepo3g06924 Mesa9g04457 . Mtr3g3447 . Phco7g01918 . . . . . . . . . . Trre5g04775 . . . . . . .
Pvu9g1646 . . . Aed10g0741 . . Ahy8g2565 . . Amo08g2319 . . . Bach2g02337 . Bva06g01601 . . . Dod09g0064 . . . . Gso4g1721 Gso6g1370 . Lal21g0688 Lal4g0669 . . . . . . . . . . . . . . . . Phco7g01917 . . . . . . . . . . . . . . Vimu10g01668 . . .
Pvu9g1647 . . Adu08g02561 . . . . Aip08g03112 . Amo08g2140 . . . . . . Car05g02579 Cca03g00257 . . . . . Gma06g01442 . . . . . . . . . . . . . . Lja1g4390 . . . . . . . . Psa5g1336 . . . . . . . Tpr3g3252 . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Arst Arst3g03882 Chr3 110038556 110045242 -
Aev Aev08g0554 Chr08 3143252 3149217 -
Aip Aip10g02433 Chr10 109783825 109789408 +
Arst Arst10g02356 Chr10 83628474 83634148 +
Pvu Pvu9g1638 Chr9 23016904 23017664 -
Dod Dod09g0047 Chr09 784064 784303 -
Gma Gma04g01982 Chr04 50223557 50225525 +
Gma Gma06g01433 Chr06 13642580 13642822 -
Phco Phco7g01928 Chr7 24352848 24353090 -
Ssu Ssu1g2477 Chr1 68564106 68564509 +
Pvu Pvu9g1639 Chr9 23033277 23035217 -
Arst Arst8g03708 Chr8 47437324 47439918 +
Bach Bach2g02348 Chr2 29887166 29887687 -
Bva Bva06g01615 Chr06 11450490 11451257 -
Pvu Pvu9g1640 Chr9 23039658 23041744 -
Pvu Pvu9g1641 Chr9 23048771 23052165 +
Phco Phco7g01925 Chr7 23721715 23724109 -
Pvu Pvu9g1642 Chr9 23054176 23060580 -
Amo Amo08g2308 Chr08 36481389 36487106 +
Arst Arst3g03882 Chr3 110038556 110045242 -
Lan Lan15g0478 Chr15 11133012 11143919 -
Lan Lan14g0394 Chr14 8550755 8557562 +
Phco Phco7g01924 Chr7 23691749 23698227 +
Pvu Pvu9g1643 Chr9 23080891 23081836 +
Lan Lan14g0393 Chr14 8506912 8507407 -
Phco Phco7g01920 Chr7 23500178 23500522 -
Pvu Pvu9g1644 Chr9 23086395 23091819 -
Ahy Ahy8g2562 Chr8 48532703 48540563 -
Phco Phco7g01919 Chr7 23461891 23467013 +
Pvu Pvu9g1645 Chr9 23102730 23109132 +
Aev Aev08g0554 Chr08 3143252 3149217 -
Ahy Ahy8g2564 Chr8 48568986 48574583 +
Aip Aip10g02433 Chr10 109783825 109789408 +
Amo Amo08g2318 Chr08 36560086 36566078 +
Arst Arst10g02356 Chr10 83628474 83634148 +
Lan Lan3g0706 Chr3 12528552 12535732 -
Lasa Lasa5g03475 Chr5 566205938 566211983 -
Mepo Mepo3g06924 Chr3 82886453 82893330 -
Mesa Mesa9g04457 Chr9 77934277 77940409 -
Mtr Mtr3g3447 Chr3 48316584 48323547 -
Phco Phco7g01918 Chr7 23337402 23345978 -
Trre Trre5g04775 Chr5 49586656 49593164 +
Pvu Pvu9g1646 Chr9 23114173 23118680 +
Aed Aed10g0741 Chr10 6087706 6093597 -
Ahy Ahy8g2565 Chr8 48576662 48580395 +
Amo Amo08g2319 Chr08 36568158 36571781 +
Bach Bach2g02337 Chr2 29826325 29829415 +
Bva Bva06g01601 Chr06 11391635 11392480 +
Dod Dod09g0064 Chr09 924363 925019 -
Gso Gso4g1721 Chr4 47211325 47215040 +
Gso Gso6g1370 Chr6 13453972 13458045 -
Lal Lal21g0688 Chr21 5401433 5405955 -
Lal Lal4g0669 Chr4 5116164 5119628 -
Phco Phco7g01917 Chr7 23309290 23313264 -
Vimu Vimu10g01668 Chr10 22227862 22229299 +
Pvu Pvu9g1647 Chr9 23119326 23121358 +
Adu Adu08g02561 Chr08 41683841 41685767 +
Aip Aip08g03112 Chr08 121174713 121176639 +
Amo Amo08g2140 Chr08 34280421 34282271 +
Car Car05g02579 Chr05 70822985 70825662 -
Cca Cca03g00257 Chr03 3793808 3795545 -
Gma Gma06g01442 Chr06 13714953 13729735 -
Lja Lja1g4390 Chr1 56879138 56880826 +
Psa Psa5g1336 Chr5 104524224 104526763 -
Tpr Tpr3g3252 Chr3 35805767 35807575 -
Lan Lan3g0706 Chr3 12528552 12535732 -