Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2464 ATGAATTCAAAAAGAGGGGGTGGGAGACCTGTGGCTATGGCTAACAATGATATGTCCAAAGGGAAAAGCATATCCGAATCTCAGCCAAAAATTGAGCAGTTGACTCAGGGTATTGCTGACACTACGCTAAACTCTGGACAAGAAGATGGTGAATGGGAGGTATATGCAAGGAAATCCAAGAACAAAGCTGGAAGCAGTGCTGCAAAACCTTGGGGAGCCCCTGCCCATAATTCTAATCCTAGGGCATGGGGGAATGCGGATATGGCTCAAAAGCCAGGCATTCGGAGCCATGGTGGAGTTGGAAGATCTTCTGGAAATCCCTGGCAGACAACACAAAATGCTAACTTTAGGAGACCGGCTGGCAGAGGAAATGGAAGGCCTCAGTTAGCAACAAGTGGATATGAAAGCAACAATGTGACTTCAAATCCTTTAATTCGGCCTCCACTTGAGCATGGTTGGAACTGGCAATCTAGACCTGGTGCCATGCAGTCCAATATAAAGGATGAAATTGCACCAGAGGACCttgaaaagaataatgatgttgatgatgatgatggggAGGAGGACGACTCTGATGCTATGGAAGATACTGATGATGATCTAATGAGTGATGACTATGATTCAGATGCTAGTCAAAAGAGCCATGAGACACGTAAGAAGAGCAAATGGTTTAAGAAGTTCTTTGATATTTTGGATGGCTTGACTGTTGAACAGATAAATGAACCAGAAAGACAGTGGCATTGTCCAGCTTGTCAAGGTGGTCCTGGAGCTATTGATTGGTACAGAGGACTGCAGCCACTGATGACACATGCCAAAACAAAGGGATCAAAAAGGGTGAAGATTCACAGGGAGCTTGCTATACTTTTGGATGAGGAATTACGCAGAAGGGGTACTTCAGTAATTCCAGCTGGTGAAGTATTTGGTAAATGGAAAGGTttgaaagaagaagagaaagatcaTGAAATAGTTTGGCCTCCAATGGTTGTCATTCAGAATACAAAGCTTGAACAGGACGAAAATGATAAGTGGATAGGTATGGGTAACCAAGAACTTCTTGATTATTTTAGCACATATGATGCTGTGAAAGCGCGACATGCTTATGGCCCACAGGGTCATCGTGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTAGTGGCTATCTAGAGGCAGAGCGTCTCCACAAGCATTTTGCAGATCAAGGAACTGATAAAGATTCTTGGTTCAATCGCCGTATTTTATATCTCCCTGGGGGGAATCGCCAGCTCTATGGATACATGGCTACAAAAGAAGATCTGGACTTTTTCAATAAGCATTGCCAAGGTAAATCTAGACTGAAATATGACTTGAGGTCATATCAGGAGATGGTTGTACACCAAATTAGGCAAATGAGTGAGGACAACCAACAACTTATCTATTTTAAGAACAAGGCTGTCAAAGGAGCAAAACACACAAAAGCTCTTGAGGAATCTATTGGTATAATGTCTGAGAAGCTGCGGAAGACAATGGAGGAAAATCGCATTGTGAGGAGGAGAACTAAAATGCAACATGAAGAGACCAAAGAAGAGATGTATATGCAAGAACAATTCTTCAAGGACCAGATCAAAATCATTCATGATTCAAGGGATGCAAAGGAAGAAGATTTTGAGAGGATGCAACAGGAGGAACGGGAGAAGGTGAAGCAGTCAAGTACTACTGGTCCTGCAAATTCTGAGGAATACAGACTCAAGGTGGATGAATATCTAAAATTTGTTGAGGTCCAAGATAAAGAAATGGAGAACTTTGTTGCTGAAAAGGAGAAACTGTTGCATGCTCATGAAGTGGGCTATGCTGCAATGAAGCGGAAGCATTGGGAGGCAGAGGTGCAGTATGAGCAGAAGTTTGATGAGGAACTAGCCAAGCTCATGGAAAAGTACTCCCCATCGGAGAAAAACTCCACCAATGGTATCTAA 1950 0.4195 MNSKRGGGRPVAMANNDMSKGKSISESQPKIEQLTQGIADTTLNSGQEDGEWEVYARKSKNKAGSSAAKPWGAPAHNSNPRAWGNADMAQKPGIRSHGGVGRSSGNPWQTTQNANFRRPAGRGNGRPQLATSGYESNNVTSNPLIRPPLEHGWNWQSRPGAMQSNIKDEIAPEDLEKNNDVDDDDGEEDDSDAMEDTDDDLMSDDYDSDASQKSHETRKKSKWFKKFFDILDGLTVEQINEPERQWHCPACQGGPGAIDWYRGLQPLMTHAKTKGSKRVKIHRELAILLDEELRRRGTSVIPAGEVFGKWKGLKEEEKDHEIVWPPMVVIQNTKLEQDENDKWIGMGNQELLDYFSTYDAVKARHAYGPQGHRGMSVLIFEASASGYLEAERLHKHFADQGTDKDSWFNRRILYLPGGNRQLYGYMATKEDLDFFNKHCQGKSRLKYDLRSYQEMVVHQIRQMSEDNQQLIYFKNKAVKGAKHTKALEESIGIMSEKLRKTMEENRIVRRRTKMQHEETKEEMYMQEQFFKDQIKIIHDSRDAKEEDFERMQQEEREKVKQSSTTGPANSEEYRLKVDEYLKFVEVQDKEMENFVAEKEKLLHAHEVGYAAMKRKHWEAEVQYEQKFDEELAKLMEKYSPSEKNSTNGI 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2464 649 MobiDBLite consensus disorder prediction 541 561 - -
Ssu1g2464 649 MobiDBLite consensus disorder prediction 175 205 - -
Ssu1g2464 649 CDD RRM_like_XS 322 432 IPR005380 GO:0031047
Ssu1g2464 649 MobiDBLite consensus disorder prediction 129 144 - -
Ssu1g2464 649 MobiDBLite consensus disorder prediction 18 48 - -
Ssu1g2464 649 MobiDBLite consensus disorder prediction 1 215 - -
Ssu1g2464 649 Pfam XS domain 319 432 IPR005380 GO:0031047
Ssu1g2464 649 Pfam XS zinc finger domain 248 286 IPR005381 GO:0031047
Ssu1g2464 649 MobiDBLite consensus disorder prediction 541 570 - -
Ssu1g2464 649 MobiDBLite consensus disorder prediction 102 118 - -
Ssu1g2464 649 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 15 641 - -
Ssu1g2464 649 PANTHER PROTEIN SUPPRESSOR OF GENE SILENCING 3 15 641 IPR044287 GO:0031047|GO:0051607
Ssu1g2464 649 Gene3D XS domain 314 492 IPR038588 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2464 Ssu-Chr1 68354051 68357493 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2464 - - gmx:100792019 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2464 1 68354051 68357493 Ssu1g2464 1 68354051 68357493 ECH
Ssu5g2934 5 76055817 76059192 Ssu1g2464 1 68354051 68357493 PCT