Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1335 ATGCTTCAGCACAGTTTCAAGACATGGGCTTCCATCATTAGGAGCTTATGTGTGGATTCCAGGCACAATGAAGCCTTGTCCTTTTTCCATCATTGCTTGAAGGATTCTGCAGCTTTTAAACCAGATCACCAAGTCCTTGCTGCAATTCTCAAGTCTTGTTCAGCCCTTTTGGCTGCCAACTTGGGAAAATGTCTGCATTGTTATGTTGTTAAACAAGGTCATGTTTCTTGCCATGTTACTGGTAAATCATTGCTTAATTTGTATGCCAAATGTGGTATGCTTGATGATTGTCACAAGTTGTTTGATCAGCTCAGTCATTGTGATCCTGTCGTTTGGAACATTGTCTTGTCTGGGTTTTCAGGGTCTAGTAAACATGATGTTGATGTGATGAGAGTGTTTAGGACAATGCATATGAGTGGAAAGGCTATGCCCAATTCTGTTACTGTTGCTACTCTTCTTCCGGTGTGTGCTCGTTCGGGTAATCTGAATGCTGGAAAGATTGTGCATGGTTATGTTATCAAATCTGGTTTTGAAGAGGATGCATTTGCTGGTAATGCTCTAGTGTCAATGTATGCGAAGTGTGGACTCGTGTCTTGTGATGCATATGCTGTCTTTGATAGTATTATTCACAAAGATGTTGTTTCGTGGAATGCGATGATTGCAGGCCTTGCTGAAAATGGGTTGTTAGAAGAAGCATTCTCGTTCTTCAGGTCGATGGTGAAAGGACCTATACAACCAAACTATGCAACCATAGCCAATATTCTGCCAGTTTGTGCTTCATTTGATGACATTGCTGCGTATTGTAGTGGAAGGCAAATCCACTCTTATGTACTGCAGTGGCCTGAATTGTCTGGTGATGTTTCTGTATGTAATGCTTTGATGAGCTTCTACTTAAAAATTAGACGGACGAAAGAAGCCGAGTCTTTGTTTTGGGCAATGAATGCAAGGGATTTAGTCTCTTGGAATGCAATTATTGCAGGATATGCATCAAATGGTGAATGGTTAAAAGCATTGTATCTATTTGGTAATTTAGCGTCTCTAGAGACATTATTATTGGATTCCGTGACCATGGTCAGCATACTTCCAGCATGTGCACAATTGGAAAATTTGCTGGTGGGGAAACAGGTCCATGCATATATTTTCAGACATCCTTTTCTTTTTGAAGATGCTTCTGTTGGAAATGCTCTAGTTAGTTTCTATGCAAAATGTGGCTATATAGAAGAAGCATATCATGCGTTTTCTATGATATCTAGGAAAGATTTGATTTCATGGAATTCTATTTTGGATGCCTTTGGAGAGAAGAGGCATCATTCAAGATTTATCAGCCTGTTACATTTGATGCTTAAAATAGGAATTAGACTCGATTACGTTACAATATTAACTATAATCCATTTTTGTGCTTCTCTTTTGAGAGTTGAAAAGGTGAAAGAAATACACGGATATTCAATTAGGACTGAATCTTTATTTAGTGCTACTGCGCCAACGGTTGGGAATGCAATACTTGATGCATATTCCAAGTGTGGTAACATTGAGTATGCAAATAAAATATTTCAGAATCTATCAGGGAAAAGGAATCTGGTCACGTGCAATTCATTGATATCAGGTTACGTGGGTTTAGGATCACATCATGATGCAAATATGATATTTTGTGGGATGCTAGAGACAGACCTTACCACCTGGAATCTAATGGTTAGAGTATATGCGGAAAATGATTGTCCTGAGCAAGCACTTGAATTGTTCTTAAAGTTACAAATTCTAGGGATGAAGCCTGATGTGGTGACTATCATGAGCCTCCTCCCAGTATGCACACAAATGGCATCAGTTCACTTAATAAGCCAGTGTCACGGTTACATTATTCGGTCAAGTTTTGAGGATCTTCATCTTAAAGGAACTCTCTTAGATGCTTATGCAAAATGTGGCATCATAGGCTCTGCATATAAAATATTTCAATCTAGTGCGGATAAGGATCTGGTTATGTTTACTTCTATGATTGGTGGGTATGCTATGCATGGAATGAGTGAAGACGCGCTTAGGATTTTTTCTCATATGCTAAATTTGGGAATCAAGCCAGACCATGTTATTTTTACTTCAATATTATCTGCTTGCAGTCATGCCGGACGCATAGATGAAGGACTGAGGATATTTGACTCCATAGAGAAAATCCATGCTATGAAACCAACTATGGAACAGTGTGCTTGTGTGGTGGATCTCCTAGCACGAGGTGGCCGCATTAGTGAAGCATATTCTTTTGTGACCAAGATGACAATTGAAGCTAATGCAAATATTTGGGGGACATTGCTTGGGGCCTGTAAAACCTATCATGAGGTTGAATTGGGTCGTATTGTTGCTGACAAACTCTTCAAAATTGAAGATAATGATATTGGAAACTACATTCTAATGTCAAATTTGTACGCAGCAGATGCTAGATGGGATGGGGTAATGGAGGTCAGAAAGATGATGAGGAACAAAGATTTGAAAAAACCAGCAGGATGCAGCTGGATTGAAGTTGAGAGGACGAATAACATTTTTGTGGCTGGAGATTGTTCCCACCCGCAAAGAAGCTTGATTTATAGTACATTGTATGCATTGGATCAACAAGTAAAACAACCAGTGGAATTTTAG 2622 0.3928 MLQHSFKTWASIIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHQVLAAILKSCSALLAANLGKCLHCYVVKQGHVSCHVTGKSLLNLYAKCGMLDDCHKLFDQLSHCDPVVWNIVLSGFSGSSKHDVDVMRVFRTMHMSGKAMPNSVTVATLLPVCARSGNLNAGKIVHGYVIKSGFEEDAFAGNALVSMYAKCGLVSCDAYAVFDSIIHKDVVSWNAMIAGLAENGLLEEAFSFFRSMVKGPIQPNYATIANILPVCASFDDIAAYCSGRQIHSYVLQWPELSGDVSVCNALMSFYLKIRRTKEAESLFWAMNARDLVSWNAIIAGYASNGEWLKALYLFGNLASLETLLLDSVTMVSILPACAQLENLLVGKQVHAYIFRHPFLFEDASVGNALVSFYAKCGYIEEAYHAFSMISRKDLISWNSILDAFGEKRHHSRFISLLHLMLKIGIRLDYVTILTIIHFCASLLRVEKVKEIHGYSIRTESLFSATAPTVGNAILDAYSKCGNIEYANKIFQNLSGKRNLVTCNSLISGYVGLGSHHDANMIFCGMLETDLTTWNLMVRVYAENDCPEQALELFLKLQILGMKPDVVTIMSLLPVCTQMASVHLISQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGSAYKIFQSSADKDLVMFTSMIGGYAMHGMSEDALRIFSHMLNLGIKPDHVIFTSILSACSHAGRIDEGLRIFDSIEKIHAMKPTMEQCACVVDLLARGGRISEAYSFVTKMTIEANANIWGTLLGACKTYHEVELGRIVADKLFKIEDNDIGNYILMSNLYAADARWDGVMEVRKMMRNKDLKKPAGCSWIEVERTNNIFVAGDCSHPQRSLIYSTLYALDQQVKQPVEF* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1335 873 Gene3D Tetratricopeptide repeat domain 165 268 IPR011990 GO:0005515
Psa5g1335 873 Gene3D Tetratricopeptide repeat domain 269 382 IPR011990 GO:0005515
Psa5g1335 873 Gene3D Tetratricopeptide repeat domain 7 164 IPR011990 GO:0005515
Psa5g1335 873 Gene3D Tetratricopeptide repeat domain 492 624 IPR011990 GO:0005515
Psa5g1335 873 Gene3D Tetratricopeptide repeat domain 629 857 IPR011990 GO:0005515
Psa5g1335 873 PANTHER OS07G0578800 PROTEIN-RELATED 472 870 IPR045215 GO:0003723|GO:0009451
Psa5g1335 873 PANTHER OS07G0578800 PROTEIN-RELATED 91 370 IPR045215 GO:0003723|GO:0009451
Psa5g1335 873 PANTHER OS07G0578800 PROTEIN-RELATED 372 469 IPR045215 GO:0003723|GO:0009451
Psa5g1335 873 PANTHER OS07G0578800 PROTEIN-RELATED 8 93 IPR045215 GO:0003723|GO:0009451
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Psa5g1335 873 Pfam E motif 773 835 IPR046848 -
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Psa5g1335 873 Pfam PPR repeat family 655 703 IPR002885 -
Psa5g1335 873 Pfam PPR repeat family 211 251 IPR002885 -
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Psa5g1335 873 PANTHER OS02G0290000 PROTEIN 91 370 - -
Psa5g1335 873 PANTHER OS02G0290000 PROTEIN 8 93 - -
Psa5g1335 873 PANTHER OS02G0290000 PROTEIN 372 469 - -
Psa5g1335 873 PANTHER OS02G0290000 PROTEIN 472 870 - -
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Psa5g1335 873 TIGRFAM PPR: pentatricopeptide repeat domain 319 342 IPR002885 -
Psa5g1335 873 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Psa5g1335 873 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Psa5g1335 873 TIGRFAM PPR: pentatricopeptide repeat domain 527 556 IPR002885 -
Psa5g1335 873 TIGRFAM PPR: pentatricopeptide repeat domain 658 691 IPR002885 -
Psa5g1335 873 TIGRFAM PPR: pentatricopeptide repeat domain 693 719 IPR002885 -
Psa5g1335 873 Gene3D Tetratricopeptide repeat domain 386 491 IPR011990 GO:0005515
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 721 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 559 585 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 527 554 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 8 31 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 289 314 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 498 519 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 394 419 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 83 104 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 422 452 IPR002885 -
Psa5g1335 873 Pfam PPR repeat 319 342 IPR002885 -
Psa5g1335 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1335 Psa-Chr5 104491119 104494878 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1335 145 869 Glycoside Hydrolase AT3G49170 29.524 1.79e-101 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1335 - - gmx:100783369 1460.66