Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal2g1409 ATGCTTCAACGCAATTTCAAGACATGGGCTTCAATCATTAGAAGCTTATGTGTAGATTCTAGGCACAACGAAGCCTTGTCTTTTTTTCATCATTGCTTGAAGGATAGTGCAGCTTTTAAACCTGATCACCAAGTCCTTGCTGCAATTCTCAAGTCATGTTCTGCTCTTTTGGCTGCTAACTTGGGAAAATGTTTACATAGTTCTGTTGTTAAACAAGGTCATGTCTCTTGCAATGTTACTAATAAAGCATTGCTTAACTTGTATGCTAAATGTGGCATACTTGATGATTGTCACAAGCTGTTTGATCAGCTTGGTCGCTGTGATCCGGTTATTTGGAACATTGTTTTGTCTGGGTTTTCGGGGTCCGGTAAAAATGATGCTGATGTGATGAGGGTGTTTAGGACGATGCATTTGAGTGGAGAGGCTATGCCGAATTCTGTCACCGTTGCTACTGTTCTTCCTGTTTGTGCTCGTTCAGGGAATTTGAATGGTGGAAAGAGTGTGCATGGTTATGTTATCAAATCTGGTTTTGAAGAGGACACATTTGCTGGAAATGCTTTGGTGTCGATGTATGCAAAGTGTGGACTCGTGTCATGTGATGCATATGCTGTCTTTGATGGTATTATTCACAAAGATGTTGTTTCGTGGAATGCAATGATTGCAGGCCTTGCTGAGAATGGGTTGTTAGAAGAAGCATTCTCGTTGTTCAGTTCAATGGCGAAAGGACCTGTACAGCCAAATTATGCGACCATAGCTAATATTTTGCCGGTTTGTGCTTCATTTGATGAGAAACTTGCCTACCGTTGTGGAAGGCAAATTCACTCTTATGTGCTGCAGTGGCCTGAATTGTTAGCTGATATTTCTGTATGTAACGCTTTGATGAGCTTCTACTTAAAAGTTGGACGGACAAAAGAAGCTGAATCTTTGTTTTGGGCAATGGATGCAAGGGATTTGGTCTCTTGGAATGCAATTATTGCGGGATATGCATTGAATGGTGAATGGTTAAAAGCATTGCATGTATTTGGTAATTTAGTGTCTCTAGAAATGTTATTGTTGGATTCTGTAACCATGGTCAGCATACTTCCAGCATGTGCACAGTTGGACAACTTGCAGGCGGGGAAACAAGTCCATGCGTATATTTTGAGACATCCTTTTCTTTTTGAAGATACTTCTGTTGGAAATGCTTTAGTTAGTTTCTATGCAAAATGTGGCTATATAGAAGAAGCATATCACACATTTTCTATGATATCTAGGAAAGATTTGATTTCATGGAATTCTATTTTGGATGCCTTTGGAGAGAAGAGGCATCATTCAAGATTTCTCAGCCTGTTACATGTGATGCTTAAACTAGATATTAGACCCGACTCCGTTACAATATTGACCATAATCCGTTTTTGTGCTTCTCTTTTGAGAGTAGAAAAGGTGAAAGAAATACACAGCTATTCAATTAGGACTGGATCTTTATTAAGTGCTACTGCGCCAACTGTTGGGAATGCAATACTTGATGCATATTCCAAATGTGGTAACATTGAGTATGCAAATAAAATGTTTCAGATTCTGTCAGAAAAAAGGAATCTGGTCACATGCAATTCATTGATATCAGGTTATGTGGGTTTAGGATCACATTATGATGCAAATATGATATTTAGTGGGATGTCAGAGACGGACCTTACCACGTGGAATCTAATGGTTCGAGTATATGCCGAAAATGATTGTCCCGAGCAAGCTCTTGAATTGTTCTCAAAGTTACAAACTCAAGGGATGAAGCCTGATGTCGTGACTATCATGAGCCTCATTCCAGTATGCACACAAATGGCATCAGTTCACTTACTGCGCCAGTGTCATGGATACATTATTCGGTCTAGTTTTGAGGATCTTCATCTTAAAGGGACCCTCTTAGATGCTTATGCAAAATGTGGCATCATAGGATGTGCATGTAAGATATTTCGATCAAGTGCTGATCAGGATCTGGTTATGTTTACTGCTATGATTGGTGGGTATGCTATGCATGGCATGAGTGAAAAAGCACTTGAGACTTTTTCTCGTATGCTCAATTTGGGAATCAAGCCAGATCATGTTATATTTGCTTCCATATTATCTGCTTGTAGTCACGCCGGCCGCATAGATGAAGGACTGAAGATATTTGATTCAATAGAGAAAATCCATGGTATGAAACCAACTATGGAACAATATGCTTGTGTGGTGGATCTCCTCGCTCGAGGTGGCCTCATTAGTGAAGCATATTCTTTTGTGACCAAGATGCCAATTGAAGCTAATGCAAATATTTGGGGGACATTGCTTGGTGCCTGCAAAACCTATCATGAGGTCGAATTGGGTCGTATTGTAGCGGACAAACTCTTCAAAATTGAAGCTAATGATATTGGAAACTACATTGTATTGTCAAATTTGTACGCCGCAGATGATAGATGGGATGGGGTAATGGAGGTTAGAAAGATGATAAGGAACAAAGATTTGAAAAAACCAGCTGGATGCAGCTGGATCGAAGTTGAGAGGACAAGTAACATTTTTGTGGTTGGAGATTGTTCCCATCCACAAAGAAGCTTGATTTATAGTACACTCTGTACATTAGATCAACAAGTAAAAGAACCGGTAGAATTTTAG 2622 0.397 MLQRNFKTWASIIRSLCVDSRHNEALSFFHHCLKDSAAFKPDHQVLAAILKSCSALLAANLGKCLHSSVVKQGHVSCNVTNKALLNLYAKCGILDDCHKLFDQLGRCDPVIWNIVLSGFSGSGKNDADVMRVFRTMHLSGEAMPNSVTVATVLPVCARSGNLNGGKSVHGYVIKSGFEEDTFAGNALVSMYAKCGLVSCDAYAVFDGIIHKDVVSWNAMIAGLAENGLLEEAFSLFSSMAKGPVQPNYATIANILPVCASFDEKLAYRCGRQIHSYVLQWPELLADISVCNALMSFYLKVGRTKEAESLFWAMDARDLVSWNAIIAGYALNGEWLKALHVFGNLVSLEMLLLDSVTMVSILPACAQLDNLQAGKQVHAYILRHPFLFEDTSVGNALVSFYAKCGYIEEAYHTFSMISRKDLISWNSILDAFGEKRHHSRFLSLLHVMLKLDIRPDSVTILTIIRFCASLLRVEKVKEIHSYSIRTGSLLSATAPTVGNAILDAYSKCGNIEYANKMFQILSEKRNLVTCNSLISGYVGLGSHYDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALELFSKLQTQGMKPDVVTIMSLIPVCTQMASVHLLRQCHGYIIRSSFEDLHLKGTLLDAYAKCGIIGCACKIFRSSADQDLVMFTAMIGGYAMHGMSEKALETFSRMLNLGIKPDHVIFASILSACSHAGRIDEGLKIFDSIEKIHGMKPTMEQYACVVDLLARGGLISEAYSFVTKMPIEANANIWGTLLGACKTYHEVELGRIVADKLFKIEANDIGNYIVLSNLYAADDRWDGVMEVRKMIRNKDLKKPAGCSWIEVERTSNIFVVGDCSHPQRSLIYSTLCTLDQQVKEPVEF* 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 726 IPR002885 -
Mal2g1409 873 PANTHER OS07G0578800 PROTEIN-RELATED 371 469 IPR045215 GO:0003723|GO:0009451
Mal2g1409 873 PANTHER OS07G0578800 PROTEIN-RELATED 8 93 IPR045215 GO:0003723|GO:0009451
Mal2g1409 873 PANTHER OS07G0578800 PROTEIN-RELATED 472 870 IPR045215 GO:0003723|GO:0009451
Mal2g1409 873 PANTHER OS07G0578800 PROTEIN-RELATED 84 370 IPR045215 GO:0003723|GO:0009451
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Mal2g1409 873 Gene3D Tetratricopeptide repeat domain 275 344 IPR011990 GO:0005515
Mal2g1409 873 Gene3D Tetratricopeptide repeat domain 348 492 IPR011990 GO:0005515
Mal2g1409 873 Gene3D Tetratricopeptide repeat domain 493 626 IPR011990 GO:0005515
Mal2g1409 873 Gene3D Tetratricopeptide repeat domain 7 160 IPR011990 GO:0005515
Mal2g1409 873 Gene3D Tetratricopeptide repeat domain 628 857 IPR011990 GO:0005515
Mal2g1409 873 PANTHER OS02G0290000 PROTEIN 8 93 - -
Mal2g1409 873 TIGRFAM PPR: pentatricopeptide repeat domain 319 344 IPR002885 -
Mal2g1409 873 TIGRFAM PPR: pentatricopeptide repeat domain 693 726 IPR002885 -
Mal2g1409 873 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Mal2g1409 873 TIGRFAM PPR: pentatricopeptide repeat domain 658 691 IPR002885 -
Mal2g1409 873 TIGRFAM PPR: pentatricopeptide repeat domain 214 242 IPR002885 -
Mal2g1409 873 TIGRFAM PPR: pentatricopeptide repeat domain 422 456 IPR002885 -
Mal2g1409 873 PANTHER OS02G0290000 PROTEIN 84 370 - -
Mal2g1409 873 PANTHER OS02G0290000 PROTEIN 371 469 - -
Mal2g1409 873 PANTHER OS02G0290000 PROTEIN 472 870 - -
Mal2g1409 873 Pfam E motif 773 835 IPR046848 -
Mal2g1409 873 Pfam PPR repeat 527 553 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 559 587 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 498 520 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 8 31 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 694 719 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 289 315 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 394 419 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 422 451 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 658 688 IPR002885 -
Mal2g1409 873 Pfam PPR repeat 319 344 IPR002885 -
Mal2g1409 873 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Mal2g1409 873 Gene3D Tetratricopeptide repeat domain 161 274 IPR011990 GO:0005515
Mal2g1409 873 Pfam PPR repeat family 211 251 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal2g1409 Mal-Chr2 16895701 16898322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal2g1409 145 869 Glycoside Hydrolase AT3G49170 29.524 3.01e-105 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal2g1409 - - gmx:100783369 1476.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g1409 2 16895701 16898322 Mal2g1409 2 16895701 16898322 ECH