Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1649 ATGCTTGGACGGGATTTCAGGACATGGGGTTCCATCGTTCGGAGCTTGTGTTTAGATGCAAAACACAGCGAAGCCTTGTCTCTTTTCCACCTCTGCTTAAAGGGTTATGAAGCTTTCAAACCTGATCACACTGTCATCGCTGCCATTCTCAAGTCTTGTTCTGCCCTTTTGGCTCCCAAATTGGGTAGAGCTCTGCATAGTTATGTTGTTAAACAAGGTCATGTTTTTTGTCAGGTTACCAATAAAGGGTTGCTCAACATGTATGCCAAATGCGGCATGCTTGATGATTGCCTCAAGCTGTTTTCTCAGCTCAATCACCGTGACTCTGTTTCTTGGAATATTGTCTTGTCTGGCTTTTCTGGGTCCAACAAATGTGATTCTGATGTGATGAGGGTGTTTAAGATGATGCTTTCCAGTGGGGATGCAATACCAAATTCTATTTCTGTTGCTACTGTCCTTCCTGCTTTTGCTCGTTTGGGGGACCTCGATGCTGGACTGTGTGTGCATGCTTATGTTATCAAGTCTGGTTTCGAACAAGACACCCTCGGTGGAAATGCTCTTGTGTCAATGTATGCAAAGTGTGGGCTGGTGTCTCCTGATGCACATGCTGTCTTTGATGATATTGTTCACAAAGATGTTGTTTCGTGGAATGCAATGATTGCGGGCTTGGCTGAGAATGGGTTAGTGGAGGATGCATTTTTGTTGTTCAGTTCAATGTTGAAAGGACCTATGCAGCCGAATGATGCGACTGTTGCAAATATTCTGCCTGTTTGTGCTTCATTTGATAAGAGTGTTGCATACCGTTGTGGAAGGCAGATCCACTCTTATGTGCAGCAGTGGCCTGAATTATCAGCTGATATTTCTGTCTGTAATGCTTTGATTAGCTTCTACTTAAAAGTTGGGCAAATGAGGGAAGCAGAAGCTTTGTTTTGGACAATGGATTCAAGGGACTTGGTCACGTGGAATGCTCTTGTTGCAGGGTATACATCAAATGGTGAATGGTTAAAAGCACTGCATCTGTTTGGTAATTTAGTATCTCTAGAGACGTTATTGCCAGATTCTGTGACCATGGTCAGCATACTTCCAGTTTGTGCACAGTTGAAAAATTTGCAGTTGGGGAAAGAAATCCACGCGTATATTTTTAGACATCCTTTTCTTTTTTATGATACTGCTGTTGGAAATGCTTTAGTTAGTTTCTATGGAAAATGCGGCTATTCAGAAGAAGCATATCATACTTTTTCCATGATCCCCAGGAAAGATTTGATTTCGTGGAATTCTATTTTTGATGCCTTTGGAGAGAAGAGGCATCATTCAAAATTTATCAACTTGTTACATTGGATGTTTAAACTCGGAATTAGACCTGATTCAGTTACAATGCTGACCATAATCCGATTTTGTGCCTCTCTTTTGAGAGTAAAAAAGGTTAAAGAAATACATAACTATTCAATTAGAACTGGGTCTTTATTAAGTGATACTACACTAACAGTTGAGAATGCAATACTTGATGCATATTCCAAATGTGGAAACATGGAGTATGCTAACAAAATGTTTCAGAATCTATCAGAAAAAAGGAATCTGGTCACATGCAATTCACTAATATCTGGTTATGTGGATTTAGGATCACATAGTGATGCAAACATGATATTTAGTGGGATGACAGAAACTGACCTTACCACATGGAATCTTATGATTCGGGTATATGCAGAAAATGATTGTCCTGAACAAGCCCTTAGATTTTTTTATGCATTACAAGCTCGAGGGATGAAGCCTGATACGGCGACTATCATGAGCCTCCTTCCAGTCTGCACACAAATGGCATCAGTACCCTTGCTGAGCCAGTGCCATGGATATATTATTCGGTCATTTTTAAAGGATCTCCACCTCGAAGTTGCCCTCTTAGATGCATATGCCAAATGTGGCCTCATAGGTCATGCATATAAGATATTTCAATTGAGTGCTGATAAGGATCTGGTTATGTTTACTGCTATGATTGGTGGGTATGCTATGCATGGCATGAGTGAAGAAGCACTTTGGATATTTTCTCATATGCTGAAGTTGGGAATCCAGCCAGATCATATTATATTTACTTCCATATTATCTGCTTGCAGTCATGCTGGCCGAGTAGATGACGGATTGAACATATTTTATTCAATAGAGAAACTTCATGGTATGAAACCAACTTTGGTACAGTATGCTTGTGTGGTGGATCTCCTAGCTCGAGGTGGCCGCATTAGTGAAGCATACTCTCTTGTGACCAGTTTGCCAATTGAAGCTAATGCTAATCTTTGGGGGACATTGCTTGGTGCCTGTAAAACCCACCATGAGGTAGAGTTGGGCCGTATTGTAGCAAACCAACTCTTCAAAATTGAAGCTAACAATATAGGAAACTACATTGTACTATCCAATTTGTTCGCAGCGGATGGTAGATGGGATGGGGTGATGGAAGTGAGAAAAATGATGAGGAACAAAGATTTGAAAAAGCCAGCTGGATGCAGCTGGATCGAAGTAGAGAGATCAAATAACATTTTTGTGGCTGGAGACTGTTCCCACCCCCAAAGAAGCATTATTTACAGTACCCTACACACATTGGATCAACAAGTTAAAGAACCCGTGGAGTTTTTAGCTTAA 2628 0.4087 MLGRDFRTWGSIVRSLCLDAKHSEALSLFHLCLKGYEAFKPDHTVIAAILKSCSALLAPKLGRALHSYVVKQGHVFCQVTNKGLLNMYAKCGMLDDCLKLFSQLNHRDSVSWNIVLSGFSGSNKCDSDVMRVFKMMLSSGDAIPNSISVATVLPAFARLGDLDAGLCVHAYVIKSGFEQDTLGGNALVSMYAKCGLVSPDAHAVFDDIVHKDVVSWNAMIAGLAENGLVEDAFLLFSSMLKGPMQPNDATVANILPVCASFDKSVAYRCGRQIHSYVQQWPELSADISVCNALISFYLKVGQMREAEALFWTMDSRDLVTWNALVAGYTSNGEWLKALHLFGNLVSLETLLPDSVTMVSILPVCAQLKNLQLGKEIHAYIFRHPFLFYDTAVGNALVSFYGKCGYSEEAYHTFSMIPRKDLISWNSIFDAFGEKRHHSKFINLLHWMFKLGIRPDSVTMLTIIRFCASLLRVKKVKEIHNYSIRTGSLLSDTTLTVENAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVDLGSHSDANMIFSGMTETDLTTWNLMIRVYAENDCPEQALRFFYALQARGMKPDTATIMSLLPVCTQMASVPLLSQCHGYIIRSFLKDLHLEVALLDAYAKCGLIGHAYKIFQLSADKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDDGLNIFYSIEKLHGMKPTLVQYACVVDLLARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVANQLFKIEANNIGNYIVLSNLFAADGRWDGVMEVRKMMRNKDLKKPAGCSWIEVERSNNIFVAGDCSHPQRSIIYSTLHTLDQQVKEPVEFLA* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1649 875 Pfam E motif 773 835 IPR046848 -
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 556 590 IPR002885 -
Pvu9g1649 875 Gene3D Tetratricopeptide repeat domain 277 380 IPR011990 GO:0005515
Pvu9g1649 875 Gene3D Tetratricopeptide repeat domain 386 478 IPR011990 GO:0005515
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 726 IPR002885 -
Pvu9g1649 875 PANTHER OS07G0578800 PROTEIN-RELATED 5 93 IPR045215 GO:0003723|GO:0009451
Pvu9g1649 875 PANTHER OS07G0578800 PROTEIN-RELATED 371 469 IPR045215 GO:0003723|GO:0009451
Pvu9g1649 875 PANTHER OS07G0578800 PROTEIN-RELATED 472 870 IPR045215 GO:0003723|GO:0009451
Pvu9g1649 875 PANTHER OS07G0578800 PROTEIN-RELATED 83 370 IPR045215 GO:0003723|GO:0009451
Pvu9g1649 875 Gene3D Tetratricopeptide repeat domain 165 276 IPR011990 GO:0005515
Pvu9g1649 875 TIGRFAM PPR: pentatricopeptide repeat domain 658 691 IPR002885 -
Pvu9g1649 875 TIGRFAM PPR: pentatricopeptide repeat domain 527 556 IPR002885 -
Pvu9g1649 875 TIGRFAM PPR: pentatricopeptide repeat domain 319 344 IPR002885 -
Pvu9g1649 875 TIGRFAM PPR: pentatricopeptide repeat domain 214 247 IPR002885 -
Pvu9g1649 875 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Pvu9g1649 875 Gene3D Tetratricopeptide repeat domain 479 609 IPR011990 GO:0005515
Pvu9g1649 875 PANTHER OS02G0290000 PROTEIN 5 93 - -
Pvu9g1649 875 PANTHER OS02G0290000 PROTEIN 371 469 - -
Pvu9g1649 875 PANTHER OS02G0290000 PROTEIN 472 870 - -
Pvu9g1649 875 PANTHER OS02G0290000 PROTEIN 83 370 - -
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 394 419 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 631 650 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 498 522 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 289 316 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 559 587 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 84 104 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 527 554 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat 319 344 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat family 211 255 IPR002885 -
Pvu9g1649 875 Pfam PPR repeat family 655 703 IPR002885 -
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 143 IPR002885 -
Pvu9g1649 875 Gene3D Tetratricopeptide repeat domain 10 164 IPR011990 GO:0005515
Pvu9g1649 875 Gene3D Tetratricopeptide repeat domain 625 855 IPR011990 GO:0005515
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pvu9g1649 875 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1649 Pvu-Chr9 23148091 23150745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1649 135 869 Glycoside Hydrolase AT3G49170 28.188 4.62e-101 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1649 - - gmx:100783369 1566.59