LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre13g03420	ATGGCGGTGGAAAACGAAAACGCAGAGATTGTAAAAGCACGTATCGACAAAAGAAATTACAGAAGAATCGTTCTCCGTAACTCTCTTCAAGTTCTCCTCATCAGCGATCCCGATACCGATAAGTGTGCTGCTTCCATGAGCGTTGGCGTCGGTTACTTCTCTGATCCTGATGGTCTTGAAGGCCTCGCGCATTTTCTAGAGCACATGCTGTTTTATGCCAGCGAAAAGTACCCTGTGGAAGATAGCTACTCCAAGTATATTACTGAGCATGGAGGAAGCACCAATGCTTTTACATCTTCTGAGAACACCAATTATTTTTTTGATGTAAACACTGATGGTTTTGAAGAGGCTTTGGACAGATTTGCTCAATTCTTCACTAAACCATTGATGTCTGCTGATGCCACCATGAGGGAAATTAAAGCTGTTGACTCTGAAAATCAGAAAAATTTATTATCTGATGGGTGGAGAATGAATCAGCTTCAGAAACATCTCACTGCTGAAGATCACCCATATCATAAATTTAGCACAGGGAACTGGGAAACTTTGGAAGTCAGACCAAAAGCAAAAGGAATAGACACAAGGAATGAGCTTATCAAATTCCATGAAGAAAACTATTCTGCTAATATAATGCACCTAGTTGTATATACAAATGAAAGCCTTGATAAAATTCAAATCCTTGTTGAAGAAAAGTTCCAGGATATTAGAAACACCAATAGAGGGTCTTTTCACACCTCTAGTCAGCCATGCAAATCAGAGCATTTACAGATTATTGTCAGGACTGTCCCAATTAAACAAGGTCATAAATTAAGAATTGTATGGCCAGTGACCCCTGAAATTCGTCATTACATGGAAGGGCCATGCAGGTATCTTGGTCATCTTATTGGCCATGAAGGAGAAGGGTCTTTATATTACATTCTGAAAAAATTGGGATGGGCCACAAGCTTGTCTGCGGGTGAATCAGATTTGAGTTTAGACTTTTCCTTTTTTAAAGTTGTGATTGATCTTACTGATGCTGGTCATGAACACATGCAAGATATCGTTGGGTTGTTGTTCAAGTACATTAAGCTTCTACAGCAGTCTGGTGTTTGCAAATGGATATTTGAAGAGCTTTCAGCGGTATGTAAGACCAAGTTTCACTATCAGGACAAAATTCCTCCTAGTGATTATGTCGTTAATATTGCATCAAATATGCAGTACTATCCTCCAAAAGATTGGTTGGCAGGATCATCCCTGCCTTCTAAGTTTAGCCCTAGTGTTATCCAAATGGTACTAGATCAGCTTTCTCCAAACAATGTTCGAATTTTTTGGGAATCAAAAAGTTTTGAAGAGCATACTGATAAGGTGGAACCATGGTATGGAACTGCATATTCCATTGAAAAGATTACCGCCTCGGCAATTGAGGGGTGGGTGCTTTCTGCTCCTGATGAAAATATTCATCTTCCAGCTCCTAACAAATTCATTCCAACTGACTTGTCACTTAAAATTGTGCCAGAGAAAGTGAAATTTCCAGTTTTGTTAAGCAGGTCATCTTACTCAGCATTATGGTACAAGCCAGATACTTTGTTTTCCACACCAAAAGCTTATGTTAAGATTAATTTTAATTGCCCATATGCTGGAAACTCTCCTGAGGCTGAAATTTTGACACATATTTTCACTCAGTTGTTGATGGATTATTTGAATGATTATGCTTATTATGCTCAGGTTGCTGGTTTGTATTATAGCATAAGTCATACAGATGCTGGTTTCCAGGTGAATCTCCTTGGTTATAATCACAAGTTAAGGATTCTACTTGAAACTATAGTTGAAGAGATTGCAGCATTCAGAGTGAAAACTGACAGGTTCTCAGTTATCAAGGAAATGGTGACCAAGGAATACCAAAATTTCAAGTACCAACAACCCTATCAGCAGGCTATGTACTATTGCTCTTTGATACTACAAGATCAAACCTGGCCTTGGGTAGAACAGCTAGAAGTACTTCCTGTTCTTCAAGCTGAAGATCTTGCTAAATTTGTGCCAGTAATGCTCTCAAGGACCTTTTTAGAGTGCTATATAGCAGGAAACATTGAAAGCCAAGAAGCAGAGGGAATGACACGTCACTTAGAAGATGTTCTCTTTAAGTGTTCAAAACCTCTATGCCAACCTTTATTCCCATCTCAGCATTTGACAAATCGGGTTGCTAAACTTGAAAGTGGCATAAATTACTTTTACACTTCACAATGTCTTAATCCCGATGATGAGAATTCTGCTTTAGTGCACTATATACAGGTTGGTCGGGATGACTTTAAGCTGAATGCAAAACTTCAGCTTTTTGCCCTTGTTGCAAAGCAACCAACCTTTCACCAGCTTCGATCAGTTGAGCAACTGGGGTACATTACTGTGCTCATGCAGAGGAATGATTGCGGTGTACGCGGACTACAGTTTATCATTCAGTCCACAGTAAAGGCTCCTGGAAGCATCGAACAGAGAGTTGAGTCATTTCTCAAGATGTTTGAGACCAAACTTAAGGAGATGACAATTGAAGAATTCAAGAGTAACGTAAACGCTTTGATTGATATGAAATTAGAGAAGCACAAGAACTTGAGGGAAGAATCAACATTTTTCTGGCGAGAGATTAATGATGGTACTCTGAGATTTGATAGGAGAGACTTTGAGATTGAAGAATTAAGGAAGCTCACTCTTCAAGAATTGATAGATTTCTTCGTTGAATATGTCAAAGTTGGTGCTCCTCGAAAGAGGACTTTAAGTATACGAGTTCATGGAAACCTCCATTCTTCTGAATACAAATCAGAAGCTTCAGAACCACACTTGGCTAGAATAGATAATATTTTCAGTTTTAGAAAATCACAGTCTCTTTATGGTTCATTTAAAGGTCTTACTGGGCAGGTGAAATTGTAG	2895	0.3896	MAVENENAEIVKARIDKRNYRRIVLRNSLQVLLISDPDTDKCAASMSVGVGYFSDPDGLEGLAHFLEHMLFYASEKYPVEDSYSKYITEHGGSTNAFTSSENTNYFFDVNTDGFEEALDRFAQFFTKPLMSADATMREIKAVDSENQKNLLSDGWRMNQLQKHLTAEDHPYHKFSTGNWETLEVRPKAKGIDTRNELIKFHEENYSANIMHLVVYTNESLDKIQILVEEKFQDIRNTNRGSFHTSSQPCKSEHLQIIVRTVPIKQGHKLRIVWPVTPEIRHYMEGPCRYLGHLIGHEGEGSLYYILKKLGWATSLSAGESDLSLDFSFFKVVIDLTDAGHEHMQDIVGLLFKYIKLLQQSGVCKWIFEELSAVCKTKFHYQDKIPPSDYVVNIASNMQYYPPKDWLAGSSLPSKFSPSVIQMVLDQLSPNNVRIFWESKSFEEHTDKVEPWYGTAYSIEKITASAIEGWVLSAPDENIHLPAPNKFIPTDLSLKIVPEKVKFPVLLSRSSYSALWYKPDTLFSTPKAYVKINFNCPYAGNSPEAEILTHIFTQLLMDYLNDYAYYAQVAGLYYSISHTDAGFQVNLLGYNHKLRILLETIVEEIAAFRVKTDRFSVIKEMVTKEYQNFKYQQPYQQAMYYCSLILQDQTWPWVEQLEVLPVLQAEDLAKFVPVMLSRTFLECYIAGNIESQEAEGMTRHLEDVLFKCSKPLCQPLFPSQHLTNRVAKLESGINYFYTSQCLNPDDENSALVHYIQVGRDDFKLNAKLQLFALVAKQPTFHQLRSVEQLGYITVLMQRNDCGVRGLQFIIQSTVKAPGSIEQRVESFLKMFETKLKEMTIEEFKSNVNALIDMKLEKHKNLREESTFFWREINDGTLRFDRRDFEIEELRKLTLQELIDFFVEYVKVGAPRKRTLSIRVHGNLHSSEYKSEASEPHLARIDNIFSFRKSQSLYGSFKGLTGQVKL	964

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre13g03420	964	SUPERFAMILY	LuxS/MPP-like metallohydrolase	484	706	IPR011249	GO:0046872
	Trre13g03420	964	Pfam	Peptidase M16 inactive domain	193	369	IPR007863	-
	Trre13g03420	964	Pfam	Peptidase M16 inactive domain	662	849	IPR007863	-
	Trre13g03420	964	Gene3D	-	243	470	-	-
	Trre13g03420	964	FunFam	Putative insulin-degrading enzyme	1	241	-	-
	Trre13g03420	964	PANTHER	NARDILYSIN	3	941	-	-
	Trre13g03420	964	FunFam	Insulin-degrading enzyme-like 1 peroxisomal	726	958	-	-
	Trre13g03420	964	Pfam	Insulinase (Peptidase family M16)	31	165	IPR011765	-
	Trre13g03420	964	Gene3D	-	1	239	-	-
	Trre13g03420	964	Pfam	Middle or third domain of peptidase_M16	378	657	IPR032632	-
	Trre13g03420	964	ProSitePatterns	Insulinase family, zinc-binding region signature.	51	74	IPR001431	GO:0004222\|GO:0006508
	Trre13g03420	964	Gene3D	-	499	725	-	-
	Trre13g03420	964	SUPERFAMILY	LuxS/MPP-like metallohydrolase	246	483	IPR011249	GO:0046872
	Trre13g03420	964	SUPERFAMILY	LuxS/MPP-like metallohydrolase	6	238	IPR011249	GO:0046872
	Trre13g03420	964	FunFam	nardilysin isoform X1	243	470	-	-
	Trre13g03420	964	Gene3D	-	726	959	-	-
	Trre13g03420	964	FunFam	Insulin-degrading enzyme	499	725	-	-
	Trre13g03420	964	SUPERFAMILY	LuxS/MPP-like metallohydrolase	739	952	IPR011249	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre13g03420	Trre-Chr13	41864762	41879089	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre13g03420	K01408		-	gmx:100804856	1743.78

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre13g03420	13	41864762	41879089	Trre13g03420	13	41864762	41879089	ECH