Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02340 ATGGCGGCGGGAAAGGATAACTCAGAGATTGTGAAGGCACAAATCGACAAGAGGGATTACAGAAGAATCGTTCTTGGCAACTCTCTTCAAGCTCTCCTCATCAGCGATCCCGATACCGATAAGTGTGCTGCTTCTATGAGCGTTGGCGTTGGTTACTTCTCTGATCCTGCTGGTCTTGAAGGCCTCGCACATTTTCTAGAGCACATGCTGTTTTATGCTAGCGAAAAGTATCCCGTGGAAGATAGCTACTCCAAGTATATTACTGAGCATGGAGGAAGCACCAATGCTTTTACATCTTCTGAGAACACCAATTATTTTTTTGATGTAAACACTGATGGTTTTGAAGAGGCTCTTGACAGGTTTGCTCAATTCTTTACTAAACCATTGATGTCCGCTGATGCCACCATGAGGGAAATTAAAGCTGTTGACTCTGAAAACCAGAAAAATTTATTATCTGATGGGTGGAGAATGAACCAGCTTCAGAAACATCTCACTGCTGAAGATCACCCGTATCATAAATTTAGCACAGGGAACTGGGACACTTTGGAAGTTAGACCAAAAACTAAAGGAATAGACACAAGGAGTGAGCTTATCAAATTCCATGAAGAAAACTATTCTGCTAATCTAATGCACCTCGTTGTATATACAAATGAAAGCCTTGATAAAATTCAAAACCTCGTTGAAGAAAAGTTCAAAGATATTAGAAACACCAATCGAGATTATTTTCGCACCTCTAGTCAGCCATGCGAATCAGATCATTTACAGATTGTTGTCAGGACTGTCCCAATAAAACAAGGTCATAAATTAAGAATTGTATGGCCAGTGACCCCTGAAATTCTGCATTACATGGAAGGGCCAAGCAGGTATCTTGCTCATCTTATTGGCCATGAAGGAGAAGGGTCTTTATATTACATTCTGAAAAAATTAGGATGGGCTACAAGCTTGTCTGCGGGTGAATCAGATTTGAGTTTGGACTTTTCCTTTTTTAAAGTTGTGATTGATCTTACTGATGCTGGCCATGAACACATGCAAGATATCGTTGGGTTGTTGTTCAAGTACATTAAACTTCTACAACAGTCTGGTGTTTGCGAATGGATATTTGAAGAGCTTTCAGCGGTTTGTGAGACTAAGTTTCACTATCAGGATAAAATTCCTCCAAGTGATTATGTTGTTAATATTGCATCAAATATGCAGTACTATCCTCCAAAAGACTGGTTGGTTGGATCATCATTGCCTTCTAAGTTTAGCCCCAGTGTTATCCAAATGGTTCTAGACCAGCTTTCTCCAAATAACGTTCGAATCTTTTGGGAATCAAAAAGTTTTGAAGGACATACTGATAAGGTGGAACCATGGTATGGAACTGCATATTCCATCGAAAAAATTACTGCCTCAACAATTCAGGGGTGGGTGCTTTCCGCTCCTAATGAAAATGTGCATCTTCCAGCTCCTAACAAATTCATTCCAACTGACTTGTCTCTTAAAATTGCGCCAGAGAAACAGGTGAAATTTCCAGTTTTGTTAAGCAGGTCATCTTATTCAGCATTATGGTACAAGCCAGATACATTGTTTTCCACACCAAAGGCTTATGTTAAGATTAATTTCAATTGCCCATATGCTGGAAACTCTCCTGAGGCTGAAATTTTGACGCACATTTTCACTCAGCTATTGATGGATTACTTGAATGATAATGCTTATTATGCTCAGGTTGCTGGTTTGTATTATAGCATAAGCCATACAGATGCCGGTTTCCAGGTGAATCTCCTTGGTTATAATCACAAATTAAGGGTTCTACTTGAAACTATTGTTGATGAGATTGCAACATTCAGAGTGAAAACTGACAGTCCCTCGTATTTTGCTCATCGTTTTGGCCATCAAGGAAACGGTGACCAAGGAATACCAGAATTTCAAGTACCAACAACCCTATCAGCAGGCTATGTTCTATTGTTCTTTGATACTACAGGATCAAACCTGGCCTTGGGTAGAACAGCTAGAAGTACTTCCTGCTCTTCAAGCTGA 2016 0.3988 MAAGKDNSEIVKAQIDKRDYRRIVLGNSLQALLISDPDTDKCAASMSVGVGYFSDPAGLEGLAHFLEHMLFYASEKYPVEDSYSKYITEHGGSTNAFTSSENTNYFFDVNTDGFEEALDRFAQFFTKPLMSADATMREIKAVDSENQKNLLSDGWRMNQLQKHLTAEDHPYHKFSTGNWDTLEVRPKTKGIDTRSELIKFHEENYSANLMHLVVYTNESLDKIQNLVEEKFKDIRNTNRDYFRTSSQPCESDHLQIVVRTVPIKQGHKLRIVWPVTPEILHYMEGPSRYLAHLIGHEGEGSLYYILKKLGWATSLSAGESDLSLDFSFFKVVIDLTDAGHEHMQDIVGLLFKYIKLLQQSGVCEWIFEELSAVCETKFHYQDKIPPSDYVVNIASNMQYYPPKDWLVGSSLPSKFSPSVIQMVLDQLSPNNVRIFWESKSFEGHTDKVEPWYGTAYSIEKITASTIQGWVLSAPNENVHLPAPNKFIPTDLSLKIAPEKQVKFPVLLSRSSYSALWYKPDTLFSTPKAYVKINFNCPYAGNSPEAEILTHIFTQLLMDYLNDNAYYAQVAGLYYSISHTDAGFQVNLLGYNHKLRVLLETIVDEIATFRVKTDSPSYFAHRFGHQGNGDQGIPEFQVPTTLSAGYVLLFFDTTGSNLALGRTARSTSCSSS 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02340 671 PANTHER NARDILYSIN 5 613 - -
Vifa5g02340 671 SUPERFAMILY LuxS/MPP-like metallohydrolase 6 238 IPR011249 GO:0046872
Vifa5g02340 671 Gene3D - 243 470 - -
Vifa5g02340 671 FunFam nardilysin isoform X1 243 470 - -
Vifa5g02340 671 Pfam Insulinase (Peptidase family M16) 32 165 IPR011765 -
Vifa5g02340 671 Gene3D - 484 623 - -
Vifa5g02340 671 FunFam Putative insulin-degrading enzyme 1 241 - -
Vifa5g02340 671 Gene3D - 2 239 - -
Vifa5g02340 671 SUPERFAMILY LuxS/MPP-like metallohydrolase 484 613 IPR011249 GO:0046872
Vifa5g02340 671 SUPERFAMILY LuxS/MPP-like metallohydrolase 246 483 IPR011249 GO:0046872
Vifa5g02340 671 ProSitePatterns Insulinase family, zinc-binding region signature. 51 74 IPR001431 GO:0004222|GO:0006508
Vifa5g02340 671 Pfam Middle or third domain of peptidase_M16 378 614 IPR032632 -
Vifa5g02340 671 Pfam Peptidase M16 inactive domain 193 369 IPR007863 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02340 Vifa-Chr5 767471758 767488086 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02340 K01408 - gmx:100804856 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02340 5 767471758 767488086 Vifa5g02340 5 767471758 767488086 ECH