Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01956 ATGACTTATTCCCATGTTGATGCTTCAGGGGTTATAGGAAGGGAGAATGATAGGGAGGAAATTATCAAGCTTTTGATGCAACCTCACCCTCATGGTGATGGTGGCGGTGATAAAAGTGTGTGTGTTATTCCCATAGTGGGTATTGGAGGCTTGGGGAAGACCACACTGGCAAAGTTGGTGTTTAGTGATAAGAGGATGGATGAACTTTTCCAATTGAAGATGTGGGTGTGTGTCTCAGATGATTTTGACATTAGGCAAATAATTATTAAAATCATCAACTCTGCTGCTGCTTCAGCTCCAAATATTGCTCTTGGTCACCAAGAAAACATTAACAGCTTAGATATTGAGCAGTTACAAAGTCGTCTTAGACACAAGCTTTCTGGTCAGAAGTATTTACTAGTGTTAGATGATATATGGAGTGATGACCGTGCAAAATGGATAGAGTTGAAAGATTTATTGAAGGTTGGTGTAGTGGGAAGCAAAATCATAGTGACAACACGAAGTAACACAATTGCTTCAATGATGAGCACTGTTCACTCAGGATGTGTGGAGCTTGAAACATTGCCTAAAGGAATAGGGATGTTAATCAGCCTTGAGCACTTGCATATAACCACAAAACAGTCTTCCATTCCAGAGGATGAATTTGCAAGCTTGAACAATCTTCAAATTCTGACTTTTGAATATTGCGACAATTTGAAGGTTTTGTTCAGAAGGGCACAACTCACTTCCCTTGAAATTTTGGTTGTTCAATCATGTGGGAGCCTTGAGTCCTTACCTCTTCATATTCTGCCTAAACTGGAAGTCCTGTCTGTAATAAGACATTCCCTCAATGGATTCAAGGTGCTTCCTGAGTGGCTGACAAGAATGAGTTATCTTAAGATGCTCCATATTGTTAACTGTCCTCAACTGTTGTACCTCCCAAGTGGCATACATCGCCTCACTGCACTTGAAGATTTGAGCATAGATGGTTGTGCTGAACTGTGTAAAAAATGTGAGCCACAATCTGGTGAGTACTGGTCCTTCATCTCTCACATCAAACGCCTTTCCATTGGAGAAACAAGAGAAGGGCACATCCTTTTTCAAATGCAGTCGCGGGTGCGGTTGAAACTGCGGGATTAG 1119 0.4138 MTYSHVDASGVIGRENDREEIIKLLMQPHPHGDGGGDKSVCVIPIVGIGGLGKTTLAKLVFSDKRMDELFQLKMWVCVSDDFDIRQIIIKIINSAAASAPNIALGHQENINSLDIEQLQSRLRHKLSGQKYLLVLDDIWSDDRAKWIELKDLLKVGVVGSKIIVTTRSNTIASMMSTVHSGCVELETLPKGIGMLISLEHLHITTKQSSIPEDEFASLNNLQILTFEYCDNLKVLFRRAQLTSLEILVVQSCGSLESLPLHILPKLEVLSVIRHSLNGFKVLPEWLTRMSYLKMLHIVNCPQLLYLPSGIHRLTALEDLSIDGCAELCKKCEPQSGEYWSFISHIKRLSIGETREGHILFQMQSRVRLKLRD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01956 372 Gene3D - 5 180 IPR027417 -
Cca03g01956 372 PANTHER OS08G0543100 PROTEIN 7 190 - -
Cca03g01956 372 PRINTS Disease resistance protein signature 42 57 - -
Cca03g01956 372 PRINTS Disease resistance protein signature 311 327 - -
Cca03g01956 372 PRINTS Disease resistance protein signature 125 139 - -
Cca03g01956 372 PANTHER DISEASE RESISTANCE PROTEIN RP 7 190 IPR044974 GO:0006952
Cca03g01956 372 Gene3D Ribonuclease Inhibitor 239 346 IPR032675 -
Cca03g01956 372 Pfam NB-ARC domain 37 188 IPR002182 GO:0043531
Cca03g01956 372 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 190 IPR027417 -
Cca03g01956 372 SUPERFAMILY L domain-like 181 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01956 Cca-Chr3 39477237 39480200 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01956 - - gmx:100795479 292.352