Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1170 ATGGCGGAATCATTTCTCTTCAGCATTGCAGAGTCACTCCTATCAAAGCTTGCTTCTCAGGCTTATGAGGAAGCTTCTCGTGTGCTGGGTTTGTACGACCATCTCAAAAACCTTAAAGACACCCTATCATTAGTCCAGGCTGTCCTGTTGGATGCTGATCAAAAGCAGGAGAAGAACCATGAGCTGCGGGAATGGCTGAGGCAGCTCAAACGTGTCTTCTTTGATGCTGAAGATGTTCTAGATGAATTTGAATGCCAAACACTGCAAAACCAAGTTATCAAAGCTCATGGTACCACCAAAGACAAGGTAAGTCACTTCTTATCAACTTCTAATCCACTTGTTTTTCGTTACAAGATGGCTCAACAAATCAAAGATATCAGCATGAGACTAGACAAGGTTGCAGCTGATAGGGATAAGTTTGGCCTTAAAGCAATTGATGTTGACACACGTGTTGTGCACCGGAGAGAGATGAGAGAGACACACTCCCATGTGAACGATTCAGATGTGATAGGAAGGGAACAAGACAAAGGAGAGATCATAGAGCTCTTGAAGCAGCAGAATCCCAATGATGATCATAAAAGTCTCTCTGTTATCCCCATAGTGGGGATGGGAGGCTTGGGAAAGACCACACTTGCGAAGTTTGTGTTCAATGACAAGGGGATAGATGAGTGTTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACCTTAAGCAACTCATTATCAAAATCATCAATTCTGCTAATGATTCTGTTTTTCTTGCTGATGCTCCTGATCGCCAAAAGAATTTAAAGGAAATGGATCTGGAGCAACTGCAACAACAATTGAGAAACAAACTTGCTGATCAAAAGTTCCTACTCGTCTTGGACGACGTATGGAATGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATTCATGTAGGTGCTGCTGCAGGTAGTAAGATTCTGGTTACTACACGTAATCATTCCACTGCTTCCATGATGGGCACGGCTTCCTCTCATATGTTAGAAGGTCTTTCTCCGGAGGATTCATTGTCTTTGTTTGTCAGATGTGCGTTTAATAAAGGAGAAGAGGAAAACTATCCTCAGTTGATAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCGGTGAGAACACTAGGGAGTTTACTATTCTCCAAATTTGAGGCAAATCAGTGGGAAGATGTGAGAGACAATGAAATTTGGAATTTGCCACAGAAAAAAGATGACATTTTACCAGCCCTCAAATTGAGTTACGATCTCATGCCGTCCTATTTGAGGCAATGCTTTGCCCTATTTTCTCTTTACCCTAAGGATTACGACTTTTCTAGTTATGATGTGATTCAACTTTGGGGGGCACTCGGATTCCTTGCATCACCAAAAAAGAATAGGGCTCAAGAAGATATTGCGATTCAGTATTTGTGGGAACTATTCTCAAGATCTCTTCTTCAAGATTTTGTAAGCCATGGCTCCTATTATTCATTTCGCATACATGATTTGGTGCATGATCTTGCTCTGTTCATTGCAAAAGATGATTGTCTACTTGTAAATTCCCACATTCAAAGTATACCTGAGAACATTCAGCATCTATCTTTTGTTGAAAAAGATTTTCATGGCAAATCACTCACCACAAAAGCAGTAGGTGTGAGAACCATATTTTATCCTGGTGCTGGAGCGGAGGCAAACTTTGAAGCTAATAAATACTTGAGGATTTTGCAGTTAACGCATTCTACCTTTGAAACTTTGCCTCCTTTCATTGGGAAGTTAAAACATTTAAGATTTCTTAATCTTCGCGATAATAAGAAAATTAAGAGACTCCCTGATTCCATTTGTAAGCTCCAAAATTTGCAGTTTTTGTTCCTGAATGGGTGCACTGAGCTTGAAACACTGCCCGAAGGTTTAAGAAAATTGATAAGCCTCTATGATTTCGAGATAACCACAAAGCAAGCTGTTTTACCTGAGAACGAGATAGCAAACTTGAGTTATCTTCAATATTTGACTATTGGATATTGTGATAATGTGGAGTCTTTATTCTCAGGGATAGAGTTTCCTGCTCTTAAAGCACTGTCTGTTAGGTGCTGTAAGAGACTAAAGTCTTTGCCACTTGACAGTAAACATTTTCCTGCATTAGAGACTTTGCATGTTAGATACTGTGACAAGTTGGAATTGTTCAAGGGCCATGAAGACCAAAACTTCAACTTAAAGTTAAAAGAAGTATCATTTTGGGAAATGCCACAGCTAAAAATTCTACCTCATTGGGTTCAAGGATGTGCTAACACATTACTATCCTTGCATCTAGCACAATGCTTCAATCTTGAGGTGCTTCCTGATTGGCTGCCAATGCTAACTAATCTGAGAGTACTGGATATTGAACTTTGTCCAAAGCTTCGGTCTCTTCCAGATGGCATGCATTGCCTCACTGCCCTTGAACATTTGCGAATCAAATATTGTCTTGAATTAAGCATAAAATACGAGCCGCAAGTTGGAGAGTGTTGGGACCAAATATCACACATCAAGCAGATTACGATTGATGAACAAAAAATCTGGAAGAAGAGGTAG 2586 0.4018 MAESFLFSIAESLLSKLASQAYEEASRVLGLYDHLKNLKDTLSLVQAVLLDADQKQEKNHELREWLRQLKRVFFDAEDVLDEFECQTLQNQVIKAHGTTKDKVSHFLSTSNPLVFRYKMAQQIKDISMRLDKVAADRDKFGLKAIDVDTRVVHRREMRETHSHVNDSDVIGREQDKGEIIELLKQQNPNDDHKSLSVIPIVGMGGLGKTTLAKFVFNDKGIDECFPLKMWVCVSDDFDLKQLIIKIINSANDSVFLADAPDRQKNLKEMDLEQLQQQLRNKLADQKFLLVLDDVWNEDRVKWVELRNLIHVGAAAGSKILVTTRNHSTASMMGTASSHMLEGLSPEDSLSLFVRCAFNKGEEENYPQLINIGREIVKKCRGVPLAVRTLGSLLFSKFEANQWEDVRDNEIWNLPQKKDDILPALKLSYDLMPSYLRQCFALFSLYPKDYDFSSYDVIQLWGALGFLASPKKNRAQEDIAIQYLWELFSRSLLQDFVSHGSYYSFRIHDLVHDLALFIAKDDCLLVNSHIQSIPENIQHLSFVEKDFHGKSLTTKAVGVRTIFYPGAGAEANFEANKYLRILQLTHSTFETLPPFIGKLKHLRFLNLRDNKKIKRLPDSICKLQNLQFLFLNGCTELETLPEGLRKLISLYDFEITTKQAVLPENEIANLSYLQYLTIGYCDNVESLFSGIEFPALKALSVRCCKRLKSLPLDSKHFPALETLHVRYCDKLELFKGHEDQNFNLKLKEVSFWEMPQLKILPHWVQGCANTLLSLHLAQCFNLEVLPDWLPMLTNLRVLDIELCPKLRSLPDGMHCLTALEHLRIKYCLELSIKYEPQVGECWDQISHIKQITIDEQKIWKKR* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1170 861 Pfam Leucine rich repeat 577 633 IPR001611 GO:0005515
Gso3g1170 861 Gene3D Ribonuclease Inhibitor 521 737 IPR032675 -
Gso3g1170 861 Gene3D Ribonuclease Inhibitor 739 839 IPR032675 -
Gso3g1170 861 Gene3D - 427 515 IPR036388 -
Gso3g1170 861 CDD RX-CC_like 2 134 IPR038005 -
Gso3g1170 861 PANTHER DISEASE RESISTANCE PROTEIN RP 6 731 IPR044974 GO:0006952
Gso3g1170 861 Pfam Rx N-terminal domain 11 98 IPR041118 -
Gso3g1170 861 PRINTS Disease resistance protein signature 197 212 - -
Gso3g1170 861 PRINTS Disease resistance protein signature 281 295 - -
Gso3g1170 861 PRINTS Disease resistance protein signature 379 393 - -
Gso3g1170 861 PRINTS Disease resistance protein signature 789 805 - -
Gso3g1170 861 Gene3D - 342 426 IPR042197 -
Gso3g1170 861 Pfam NB-ARC domain 173 429 IPR002182 GO:0043531
Gso3g1170 861 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 6 731 - -
Gso3g1170 861 Coils Coil 264 284 - -
Gso3g1170 861 SUPERFAMILY L domain-like 505 829 - -
Gso3g1170 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 441 IPR027417 -
Gso3g1170 861 Gene3D - 10 124 - -
Gso3g1170 861 Gene3D - 150 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1170 Gso-Chr3 37226989 37230026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1170 567 679 Receptor kinase-like Gene Family AT5G49660 31.356 1.98e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1170 - - gmx:100805394 1572.37