Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03051 ATGGCTGAATATTTTGTCTTCGAGATTGCTGAATCACGGCTGGGGAAGCTTGCATCTAATCTTTATGAACAAGTTTCTCGAGCCTTTGATCTGTATGAGGATGTGCAAAGTTTCAGAGATACCTTGTCAATTGTAAAAGGCGTGCTGTTGGATGCTGAGGAGAAGAAGGAGAAGAAGCATGGGTTGCGTGAATGGCTCAGGCAGATTCAAAACGTATGCTTAGATGCTGAAGATGTTTTGGATGGATTTGAGTGCCAAAACCTCAGAAAACAAGTTCTCAACGCCTCCGGCACCACCAGGATGAAGGTAAACCACTTCTTTTCTTCATCTAATTCTCTTGTTTTCCGTTTTAGGATGGCTAGGAAAATAAAAGATGTTACACGTAGATTGGATAAGATAGCAGCTGATGGGAACAAGTTTGGTCTTGAGAGGATTGTTATTGATCACAGTCCTCTGCGAAGGAGAGAAATGACTTATTCCCATGTTGATGCTTCGGGGGTGATTGGAAGGGAGAGTGATAGGGAACAGATTATCAAGCTTTTGATGCAACCTCACCCTCATGGTGATGGTTATGGAGATCGAAGTGTTTGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGGAAGACCACACTTGCAAAGTTGGTGTTCAATGATAACAGAATGGATCATCTTTTCCAGCTGAAGACGTGGGTGTGTATCTCTGACGACTTTAACATAAGACAGATAATTATTAAAATCATCAACTCTGCTACTGATCCAACCATATCCGTGGTTCCTCAAGAAAGCATGAACAACTTAGATATTGAGCAGTTACAAAGTCGTCTTAGACACAAACTTTCTTGTCAGAAGTATCTACTAGTTTTGGATGACGTATGGAATGATGATCGAGCTAAATGGATAGAGTTGAAAGATTTAATTAAAGTGGGTGCAATAGGAAGCAAAATCTTGGTGACAACACGAAGTACCTCAATTGCTTCAATGATGGGCACTGTTCCCTCGTATGTTTTAGAAGGTCTTTCTGTGGAGAACTGCTTATCTCTGTTTCTGAAATGGGCATTTAGGGAAGGTGAAGAAAAAGAACATCCGTATCTAGTGGATATTGGAAAAGAAATAGTGAAAAAGTGCCGAGGGGTTCCATTAGCAGTGAAAACATCAGGAAGTTCCCTGTTCTCAGTTTTTGATTTACAAAGATGGGAAATTATGAGAGACCATGAGCTATGGAACCTGAAACAACACAAAGATGACATTTTACCTTCCCTAAAGTTGAGCTATGATCAAATGCCTTCCTATTTGAGGCACTGTTTTGCTTTCTTTTCTCTTTATCCCAAAGATTTTGGCTTTACCAGTGCTCAAATGGCTATCTTTTGGGCCACGCTTGGATTACTTCGATCTCCATTCGGAAGTCAAAAGATAGATAATATTGGAAAAGCATATATTAATGAGTTATATTCAAGGTCATTTTTGGAAGACTTTGAGGACTTCGGCACAGTTTATTATTTTAAACTACATGATTTGGTACATGATCTTTCCCTGTATGTTGCGAAAGAAGAGTTTCTAATGGTGAACTCCAATAGTCGCAATATATCAGAGCAAGTAAGGCATATATCAGTTGTTGAAAATGATTCACTAAGCCATAGTTTGTTCCCCAAGTCCAGATGTGTGAGAACTATAATATTTCCCGTTAATGGAGTGGGTGTTGGCAGTGAATCTATTCTGGAAACATGGATAGAAAGATACAAGTACTTACGACATTTAGATTTAAGTAATTCATCTTTTGAGAAACTTCCTAATTCAATTGCTAAATTGGAGCATCTGCGAGCTCTCACCCTTGACAATAATTCCAAAATAAAAAAGCTTCCTAATTCTATTTGCAGACTCCAAAACTTACAAATGTTGTCTTTGAGAAGATGCTTGGGGCTTGAAACATTGCCTAAACGATTAGGGATGTTAATCAGCCTCCGAAGATTGTATATAACCACAAAGCAGTCTATTTTGTCAGAGGATGAATTTGCAAGTTTGAACAATCTTCATACTCTGATTTTTGAATACTGTGACAATTTGAAGTTTTTGTTCCGAGGGGCACAGGCACAACTCTCGTCCCTGGAGGTTTTGATCATTCAATCATGTGGGAGCCTAGAGTCCTTACCTCTTCATATTCTCCCTAAAGTTGAGGTTCTGATTGTAACAAGGTGCGTCATGCTAAATCTGTCCTTGAACAGTGAAAGACCAATCCAAAAATTGAAGATGAAATATTTGCATATTGAGCATTGTCCTCGGCAACACACGCTGCCTGAATGGATTCAAGCAGCCTCCAACACTTTGAGAACATTGTTAATTTTAAATTTTCATTGTCTTGAGATGCTTCCCGAGTGGCTTAGCACAATGACAAGTCTTAAGATGCTCCATATTGTTAACTGTCCTCAGTTGTTTCATCTGCCGTGTGACATGCATTGTCTAAGAGCCCTTGAAGATTTGATCATAGATGGTTGTCCTGAATTGGGTAGAAAATGTGAACCTCATTCTGGTGAGTATTGGTCCTTCATTGCTCACATCAAATTGTTTCTATTGGAGAAACAAGAAAAAGGAAACTCCTTTTTCAAATGCTTTCACGACTGGGCTTGA 2625 0.3931 MAEYFVFEIAESRLGKLASNLYEQVSRAFDLYEDVQSFRDTLSIVKGVLLDAEEKKEKKHGLREWLRQIQNVCLDAEDVLDGFECQNLRKQVLNASGTTRMKVNHFFSSSNSLVFRFRMARKIKDVTRRLDKIAADGNKFGLERIVIDHSPLRRREMTYSHVDASGVIGRESDREQIIKLLMQPHPHGDGYGDRSVCVIPIVGIGGLGKTTLAKLVFNDNRMDHLFQLKTWVCISDDFNIRQIIIKIINSATDPTISVVPQESMNNLDIEQLQSRLRHKLSCQKYLLVLDDVWNDDRAKWIELKDLIKVGAIGSKILVTTRSTSIASMMGTVPSYVLEGLSVENCLSLFLKWAFREGEEKEHPYLVDIGKEIVKKCRGVPLAVKTSGSSLFSVFDLQRWEIMRDHELWNLKQHKDDILPSLKLSYDQMPSYLRHCFAFFSLYPKDFGFTSAQMAIFWATLGLLRSPFGSQKIDNIGKAYINELYSRSFLEDFEDFGTVYYFKLHDLVHDLSLYVAKEEFLMVNSNSRNISEQVRHISVVENDSLSHSLFPKSRCVRTIIFPVNGVGVGSESILETWIERYKYLRHLDLSNSSFEKLPNSIAKLEHLRALTLDNNSKIKKLPNSICRLQNLQMLSLRRCLGLETLPKRLGMLISLRRLYITTKQSILSEDEFASLNNLHTLIFEYCDNLKFLFRGAQAQLSSLEVLIIQSCGSLESLPLHILPKVEVLIVTRCVMLNLSLNSERPIQKLKMKYLHIEHCPRQHTLPEWIQAASNTLRTLLILNFHCLEMLPEWLSTMTSLKMLHIVNCPQLFHLPCDMHCLRALEDLIIDGCPELGRKCEPHSGEYWSFIAHIKLFLLEKQEKGNSFFKCFHDWA 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03051 874 Pfam NB-ARC domain 193 426 IPR002182 GO:0043531
Vimu6g03051 874 Gene3D Ribonuclease Inhibitor 521 854 IPR032675 -
Vimu6g03051 874 PRINTS Disease resistance protein signature 376 390 - -
Vimu6g03051 874 PRINTS Disease resistance protein signature 279 293 - -
Vimu6g03051 874 PRINTS Disease resistance protein signature 198 213 - -
Vimu6g03051 874 PRINTS Disease resistance protein signature 697 713 - -
Vimu6g03051 874 Pfam Leucine rich repeat 582 638 IPR001611 GO:0005515
Vimu6g03051 874 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 438 IPR027417 -
Vimu6g03051 874 Gene3D - 11 124 - -
Vimu6g03051 874 PANTHER DISEASE RESISTANCE PROTEIN RP 63 809 IPR044974 GO:0006952
Vimu6g03051 874 SUPERFAMILY L domain-like 502 844 - -
Vimu6g03051 874 Gene3D - 339 424 IPR042197 -
Vimu6g03051 874 Pfam Rx N-terminal domain 13 100 IPR041118 -
Vimu6g03051 874 Gene3D - 425 512 IPR036388 -
Vimu6g03051 874 Gene3D - 155 334 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03051 Vimu-Chr6 26890826 26893450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03051 572 689 Receptor kinase-like Gene Family AT3G11080 31.933 2.04e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03051 - - gmx:100794422 1310.05