Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1296 ATGGCTGAAGTATTTCTTTTTGATGTTGCTGAATCACTACTAGGGAAGCTTGCTTCTTATGCTTATGAAGAAGCTTCCCGAGCTTATGGTGTGTATGACGATCTGCAAGGGTTCAAAGACACTTTGTCTATTGTCAAAGGTGTGCTATTGGATGCTGAGCAGAAGAAGGACCAAAACCATGGGTTGCGTGCATGGCTGAGGCAGATTCAAAACATATGCTCTGATGCTGAAGATATATTGGAGGGATTTGAGTTCCGAAGCAAGCAAAAGCAAGTTGTCAAAGCTTCTGCCAGCACCAGGATGAAGGTAGGCTACTTCCTTTCTTCCTCTAATCCTGTTATTTTCCGTCTTAGGATGGCAAATCAAATCAAAGATATTAGGGATAGATTGGATAAGGTAGCAGCTGATGGGACCAGATTTGGACTTCAGATGATTCAGGTTAATCACAAAATTGGTGTGCAAAGGAGAGAAATGACTCATTCCCATGTTGATGCTTCTGATGTGATAGGAAGAGAGAAGGATATAGAAGAAATTATCCAACATTTGATGAAAACCCAAACCCACCTTGATGGGAGGGATAATAAAGGTACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGGTTGATGAACTTTTTCAATTGAAGATGTGGGTATGTGTTTCAGCTCCAACTATTGCTCCTGCCCACCAAGAAAACCTTAACAGTTTAGATATTGAGCAGCTACAAAGTCGTCTTAGATACAAGCTTTCTGGTCAAAAGTTTTTGTTAGTGTTAGACGATATATGGAATGAAGATCGTGCTAAATGGATTGAGTTAACAGATTTGATAAAAGCTGGTGCAGTAGAAAGCAAAATGATAGTGACCACGCGTAGCAACTCAATTGCTTCAATGATGGGAACTGTTCCCATGCATGTTTTACAAGGTCTTCCTCAGAAGGATTGTTTGTCTCTGTTTGTGAAATGGGCATTTAAGGACGGTGAAGAAGAAAAATATCCAAAACTAATGGAAATTGGAAATGAAATTGTGAAAAAATGTCGAGGGAAGTGGAAATTTGTAAGAGACCATCAGATATGGAATTTAGAGCAAAAGAAAGATGATATTTTACCTGCTCTTAAATTAAGCTATGATGAAATGCCATCCTATTTGAGACACTGTTTTGCTTCTTTCTCTCTTTATCCTAAAGATTTTACCTTCTCAAGTGAAGAAATTGTCAGTCTTTGGGTGGCACTTGGACTAGTTCAATCCTGTGATGGAAGTCAAAAGCTAGAGAATACTGCAAGAAAATATATAAATGAGTTGCATTCAAGATCATTTCTTGAAGATTTGGAAGACTTTGGCCACTTTTACATGTTCAAAGTCCATGATTTAGTGCATGATCTTGCCCTGTATGTTTCAAAAGAGGAGTTTCTAGTGATCGACTCACATACTAAGAATATACCTGAGAATGTGAGGCATTTATCAATTGTTGATGAAAATGATTTACTTGGACATGCCCGCTTGGTTTCCCAAGTCCAGAAATACTTGAGGATTTTAAATTTGAGTGATTCCACAATTCATACTCTGCCTAATTCAATTGGTAAACTGGAGCATCTCCGACATCTTGATCTTTCCAATAATTGTGAAATAAAAATTCTTCCCGGCTCTATATGCAAACTCCAAAATTTGCAAGTTTTGTCACTAAGAGGATGCAAGAAGCTTGAAAAATTACCTCAAGGATTAGGGAAGTTGATCAGTCTTCGGCAACTGTACATAACCACGAAGCAATCTGTTCTTTCAGAAAATGAATTTGCAAGCTTGAACAATCTTCAAATTTTGTGTTTTGAACATTGTGACAACCTCAAGTTATTCCTAGAGATGTTACCTCTTTGTATTCTACCTCAGTTAGTGGTTCTGTCAGTTGTAGATTGTGAGAGGTTAAATCTGGATTTGGACCACCATGACAGCTCAATCCAAAGACTAAAGCTGAATTTTCTGAATCTTGAAGCCTTGCCGCGGCTCGCGACGCTGCCTAAATGGATTGATGGAGCTGCAGACACTCTACAAACCTTAATAATCAGAAATCTTAATTTGTCTGAACAACCTCCTTTCCGCATGATGCCTAATCTGAAGAGGTTCCATATTGCAAACTGTCCTTACATCATGTATCTTCCATTTGACATGCACCCTCCCAATCTCACTGCCCTAGAAGTACTGACCATAGATGGTTGTCCTGAATTATGCCAAAAGTATCAACCACAATCTGGTTAG 2250 0.3876 MAEVFLFDVAESLLGKLASYAYEEASRAYGVYDDLQGFKDTLSIVKGVLLDAEQKKDQNHGLRAWLRQIQNICSDAEDILEGFEFRSKQKQVVKASASTRMKVGYFLSSSNPVIFRLRMANQIKDIRDRLDKVAADGTRFGLQMIQVNHKIGVQRREMTHSHVDASDVIGREKDIEEIIQHLMKTQTHLDGRDNKGTTLAKLVFNDKRVDELFQLKMWVCVSAPTIAPAHQENLNSLDIEQLQSRLRYKLSGQKFLLVLDDIWNEDRAKWIELTDLIKAGAVESKMIVTTRSNSIASMMGTVPMHVLQGLPQKDCLSLFVKWAFKDGEEEKYPKLMEIGNEIVKKCRGKWKFVRDHQIWNLEQKKDDILPALKLSYDEMPSYLRHCFASFSLYPKDFTFSSEEIVSLWVALGLVQSCDGSQKLENTARKYINELHSRSFLEDLEDFGHFYMFKVHDLVHDLALYVSKEEFLVIDSHTKNIPENVRHLSIVDENDLLGHARLVSQVQKYLRILNLSDSTIHTLPNSIGKLEHLRHLDLSNNCEIKILPGSICKLQNLQVLSLRGCKKLEKLPQGLGKLISLRQLYITTKQSVLSENEFASLNNLQILCFEHCDNLKLFLEMLPLCILPQLVVLSVVDCERLNLDLDHHDSSIQRLKLNFLNLEALPRLATLPKWIDGAADTLQTLIIRNLNLSEQPPFRMMPNLKRFHIANCPYIMYLPFDMHPPNLTALEVLTIDGCPELCQKYQPQSG* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1296 749 Pfam Rx N-terminal domain 10 96 IPR041118 -
Lja1g1296 749 Gene3D Ribonuclease Inhibitor 467 745 IPR032675 -
Lja1g1296 749 Gene3D - 10 124 - -
Lja1g1296 749 Pfam Leucine rich repeat 508 564 IPR001611 GO:0005515
Lja1g1296 749 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 7 687 - -
Lja1g1296 749 PANTHER DISEASE RESISTANCE PROTEIN RP 7 687 IPR044974 GO:0006952
Lja1g1296 749 Gene3D - 153 306 IPR027417 -
Lja1g1296 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 388 IPR027417 -
Lja1g1296 749 Gene3D - 370 464 IPR036388 -
Lja1g1296 749 CDD RX-CC_like 12 134 IPR038005 -
Lja1g1296 749 Pfam NB-ARC domain 171 348 IPR002182 GO:0043531
Lja1g1296 749 PRINTS Disease resistance protein signature 551 567 - -
Lja1g1296 749 PRINTS Disease resistance protein signature 249 263 - -
Lja1g1296 749 SUPERFAMILY L domain-like 453 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1296 Lja-Chr1 13499086 13501642 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1296 480 599 Receptor kinase-like Gene Family AT4G13920 35.433 4.91e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1296 - - gmx:100795479 947.192