Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1391 . . . . . Ahy16g0407 . . . Amo16g0216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal3g3526 . . . . . . . . . . . . . . . Tpr6g1510 . Tsu07g03358 . . . . . .
Pvu1g1392 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1393 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1394 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1395 . . Adu06g00896 . . . . . . Amo16g0215 . . . . . . . Cca03g01960 . . . . . . . Gso3g1171 . . . . . . . . . . . . . . . . . . . . . . . Pumo5g02576 . . . . . . . . . . . Viun1g01751 . .
Pvu1g1396 . . . . . Ahy16g0406 . . . . . . . . . . . . . . . . . . Gso19g1168 . . . . . . . . . . . . . . . . . . . . . . . Pste5g00280 . . . . . . Tpr6g1511 . Tsu07g03361 . . . . . Vra3g0270
Pvu1g1397 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1398 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1399 . . . . . Ahy16g0405 . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g00163 . . . . . Lja1g1293 . . . . . . . . . . . . . . . . . . . . . . . . Vra3g0269
Pvu1g1400 . . . . . . . . . . . . . . . . . Cca03g01962 . . . . . . . . Lal11g1334 . . . . . . . . . . . . . . . . . . . . . . . . Seca2g04036 . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1391 Chr1 37726212 37728725 -
Ahy Ahy16g0407 Chr16 7873071 7876358 -
Amo Amo16g0216 Chr16 3303916 3306504 -
Mal Mal3g3526 Chr3 112426362 112428596 +
Tpr Tpr6g1510 Chr6 16346623 16349882 +
Tsu Tsu07g03358 Chr07 40030630 40033254 +
Pvu Pvu1g1392 Chr1 37765576 37766121 +
Pvu Pvu1g1393 Chr1 37766599 37767721 +
Pvu Pvu1g1394 Chr1 37782961 37783290 +
Pvu Pvu1g1395 Chr1 37814346 37817113 +
Adu Adu06g00896 Chr06 10967313 10969901 +
Amo Amo16g0215 Chr16 3253002 3255813 -
Cca Cca03g01960 Chr03 39528421 39531036 +
Gso Gso3g1171 Chr3 37235871 37238725 +
Pumo Pumo5g02576 Chr5 70886760 70887647 -
Viun Viun1g01751 Chr1 29300478 29303435 +
Pvu Pvu1g1396 Chr1 37823523 37828450 +
Ahy Ahy16g0406 Chr16 7865577 7868708 -
Gso Gso19g1168 Chr19 40061207 40065674 +
Pste Pste5g00280 Chr5 1928244 1933464 +
Tpr Tpr6g1511 Chr6 16352020 16355082 -
Tsu Tsu07g03361 Chr07 40042849 40045656 +
Vra Vra3g0270 Chr3 3054897 3057752 +
Pvu Pvu1g1397 Chr1 37844916 37845430 -
Pvu Pvu1g1398 Chr1 37847351 37849933 -
Pvu Pvu1g1399 Chr1 37888324 37891198 -
Ahy Ahy16g0405 Chr16 7861051 7864630 -
Lapu Lapu1g00163 Chr1 7243564 7245902 +
Lja Lja1g1293 Chr1 13444349 13446889 -
Vra Vra3g0269 Chr3 3040194 3043287 -
Pvu Pvu1g1400 Chr1 37917813 37920413 -
Cca Cca03g01962 Chr03 39536959 39539535 +
Lal Lal11g1334 Chr11 16940580 16941500 +
Seca Seca2g04036 Chr2 122662392 122665216 +