Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01959 ATGGCGGTGGGAAAGGACGACGTGGAGATCGTGAAGGCGCGCATCGACAAGAGGAATTACAGAAGGGTCGTGCTTCACAACTCGCTTGAAGTGCTCCTCATTAGTGATCCCGATACGGATAAGTGTGCTGCTTCCATGGACGTTGGTGTCGGTTATTTCAGTGACCCTGCTGGCCTCGAAGGCCTCGCCCATTTCCTAGAGCACATGCTGTTTTATGCCAGTGAAAAATACCCAATGGAAGATAGCTACTCCAAGTATATTGCTGAGCATGGAGGAAGCACTAATGCTTTTACAGCTTCTGAACACACCAACTACTTTTTTGATGTTAACATAGATGGTTTTGAAGAGGCTCTTGACAGATTTGCTCAGTTCTTCACTAAACCATTGATGTCTGCTGATGCTACCATGAGGGAAATTAAAGCTGTTGACTCTGAAAACCAGAAGAATTTATTATCTGATGCATGGAGAATGAACCAGCTTCAGAAACATATCAGTGATGGAGATCATCCGTATCATAAATTTAGCACAGGGAACTGGGACACTTTGGAAGTTAGGCCAAAAGCAAAAGGATTAGACACAAGGAACGAGCTTCTCAAATTCTACGAAGAAAACTATTCTGCTAATCTAATGCATCTAGTTATTTACACAAATGAAAGCCTAGATAAAATTCAAAACCTTGTAGAAGAAAAGTTTCAGTATATTAGAAACACCAACAAAAGTTGTTTCCATGCTCATGGTCAACCATGCAAATCAGAGCATTTGCAGATTCTTGTCAGGACTGTCCCAATAAAGCAAGGTCATAAATTGAGAATTTTATGGCCAGTAACCCCTGAAATTCATCATTACACTGAAGGGCCATGCAGGTATCTTGGTCATCTCATTGGTCATGAAGGAGAAGGGTCTTTATATTACATCTTGAAAAAGTTGGGATGGTCCACGGGCTTGTCTGCAGGTGAATCTGATTGGAGTTTGGACTTTTCTTTCTTTAAAGTTGTAATTGATCTTACTGATGCTGGTCATGAGCACATTCAAGATATCATTGGGTTGTTGTTCAAATACATTGAGCTTCTACAACGGTGTGGTGTTCACAAATGGATTTTTAAGGAGCTTTCAGCAGTTTGTGAGACCAAGTTTCATTATCAGGACAAAATTCCTCCCAGTGATTATGTTGTTAACATTGCATCAAATATGCAGTTTTATCCTGTAAAAGATTGGTTGACAGGATCATCCTTGCCTTCTAAATTTAGCCCAAGTGTTATTCAAATGGTACTAGATCAGCTTTCTCCCGACAAAGTGCGAATCTTTTGGGAGTCTAAGAAGTTTGAGGGGCTTACTGATAAGGTGGAGCCTTGGTATGGAACTGCATATTCCATTGAAAAAATTACTGGCTCTGGAATTCGGGGGTGGGTGCTTTCCGCTCCTGATGAAAATATGCATCTTCCAGTTCCTAACGAGTTCATTCCAACTGACTTGTCACTTAAACTTGTGCAAGAAAAAGTAAAGTTTCCAGTTTTGTTAAGAAGGTCAACTTATTCAGCCTTATGGTATAAGCCAGATACATTGTTTTCTACACCCAAGGCTTTTGTAAAGATTGATTTCAATTGTCCATATGCCGGAAAATCTCCTGAGGCTGAAGTTTTGGCACATATTTTCACACAGTTATTAATGGATTACTTGAATGAATATGCTTATTATGCTCAGGTTGCTGGTCTATATTACAACATAAATCACACAGATGGTGGTTTCCAGGTGACTCTCCTTGGTTATAATCACAAGTTAAGGATTCTACTCGAAACTATAGTTGCAAAGATTGTGACCTTTGAAGTGAAAACTGACAGGTTTTCAGTTATCAAGGAAATGGTAACCAAGGAATACCAGAATTTCAAGTACCAACAACCCTATCAGCAGGCTATGTACTATTGCTCTTTGATCTTACAAGATCAAACCTGGCCTTGGATAGAACAGCTAGATGTACTTCCTGCTCTTCAAGTTGAAGATCTTGCTAAATTTGTACCAACAATGCTCTCCAGGACCTTTTTAGAGTTTTACATAGCAGGGAACATTGAAAGCCACGAAGCAGAGTCAATGGTTAAGCACATAGAAGATGTTCTCTTTAATTATTCGAAACCTCTGTGCAAGCCTTTATTTTCATCTCAACATTTGACAAATCGGGTTGTAAAACTTGAAAATGGCATGAATTACTTCTACCCATCAGAATGTCTTAATCCTGAAGAAGAGAATTCTTCTCTTGTGCACTACATACAGGTAGGTCGAGACGACTTTAAGCTGAATGTTAAACTTCAGCTTTTTGCCCTTGTTGCAAAGCAACCGACCTTTCATCAGCTACGATCAGTAGAGCAACTTGGGTACATTACTGTGCTCATGCAGAGGAATGATTCTGGTATACGTGGCCTACAGTTTATTATCCAATCCACAGTAAAGTCTCCCGGAAACATTGAGCAAAGGGTTATGGCATTTCTCCAAATGTTTGAGACCAAACTCTGCGAGATGACAAATGATGAATTCAAGAGTAATGTAAATGCTTTGATAGATATGAAACTAGAGAAACACAAAAATTTAAGGGAAGAATCAGCTTTTTTCTGGCGAGAGATCAGCGATGGTACTTTGAGGTTTGATAGAAGAGACTATGAGGTTGAAGCATTGAAACTGCTCACTCTTCAAGAATTGATAGATTTCTTCAATGAATATGTCAAAGTTGGTGCACCTCGAAAGAAAACTTTAAGTGTACGAGTTCATGGGAACCGCCATTCTTCTGAATACAAAGCAGAAGCCTCAGAAACACACTCGGCAAAAATAGATAATATATTCACATTTAGAAGATCACAGTCTCTTTATGGTTCATTTAAAGGACTTTCTGGGCAGATGAAATTATAG 2895 0.3938 MAVGKDDVEIVKARIDKRNYRRVVLHNSLEVLLISDPDTDKCAASMDVGVGYFSDPAGLEGLAHFLEHMLFYASEKYPMEDSYSKYIAEHGGSTNAFTASEHTNYFFDVNIDGFEEALDRFAQFFTKPLMSADATMREIKAVDSENQKNLLSDAWRMNQLQKHISDGDHPYHKFSTGNWDTLEVRPKAKGLDTRNELLKFYEENYSANLMHLVIYTNESLDKIQNLVEEKFQYIRNTNKSCFHAHGQPCKSEHLQILVRTVPIKQGHKLRILWPVTPEIHHYTEGPCRYLGHLIGHEGEGSLYYILKKLGWSTGLSAGESDWSLDFSFFKVVIDLTDAGHEHIQDIIGLLFKYIELLQRCGVHKWIFKELSAVCETKFHYQDKIPPSDYVVNIASNMQFYPVKDWLTGSSLPSKFSPSVIQMVLDQLSPDKVRIFWESKKFEGLTDKVEPWYGTAYSIEKITGSGIRGWVLSAPDENMHLPVPNEFIPTDLSLKLVQEKVKFPVLLRRSTYSALWYKPDTLFSTPKAFVKIDFNCPYAGKSPEAEVLAHIFTQLLMDYLNEYAYYAQVAGLYYNINHTDGGFQVTLLGYNHKLRILLETIVAKIVTFEVKTDRFSVIKEMVTKEYQNFKYQQPYQQAMYYCSLILQDQTWPWIEQLDVLPALQVEDLAKFVPTMLSRTFLEFYIAGNIESHEAESMVKHIEDVLFNYSKPLCKPLFSSQHLTNRVVKLENGMNYFYPSECLNPEEENSSLVHYIQVGRDDFKLNVKLQLFALVAKQPTFHQLRSVEQLGYITVLMQRNDSGIRGLQFIIQSTVKSPGNIEQRVMAFLQMFETKLCEMTNDEFKSNVNALIDMKLEKHKNLREESAFFWREISDGTLRFDRRDYEVEALKLLTLQELIDFFNEYVKVGAPRKKTLSVRVHGNRHSSEYKAEASETHSAKIDNIFTFRRSQSLYGSFKGLSGQMKL 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01959 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 6 239 IPR011249 GO:0046872
Cca03g01959 964 Gene3D - 241 470 - -
Cca03g01959 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 724 952 IPR011249 GO:0046872
Cca03g01959 964 Pfam Middle or third domain of peptidase_M16 378 657 IPR032632 -
Cca03g01959 964 Gene3D - 2 239 - -
Cca03g01959 964 Gene3D - 726 959 - -
Cca03g01959 964 PANTHER ENZYME, PUTATIVE-RELATED 6 964 - -
Cca03g01959 964 PANTHER NARDILYSIN 6 964 - -
Cca03g01959 964 Pfam Peptidase M16 inactive domain 193 369 IPR007863 -
Cca03g01959 964 Pfam Peptidase M16 inactive domain 662 849 IPR007863 -
Cca03g01959 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 247 482 IPR011249 GO:0046872
Cca03g01959 964 ProSitePatterns Insulinase family, zinc-binding region signature. 51 74 IPR001431 GO:0004222|GO:0006508
Cca03g01959 964 Pfam Insulinase (Peptidase family M16) 31 165 IPR011765 -
Cca03g01959 964 Gene3D - 499 725 - -
Cca03g01959 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 484 709 IPR011249 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01959 Cca-Chr3 39504340 39523625 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01959 K01408 - gmx:100804856 1821.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01959 03 39504340 39523625 Cca03g01959 03 39504340 39523625 ECH