Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1486 ATGGCAGTGGGGAAGGAAGACGCGGAGATCGTGAAGGCCCGCATCGACAAGAGGGATTACCGAAGGGTCGTGCTCCGCAACTCGCTCCAAGTGCTCCTCATTAGCGATCCCGATACCGATAAGTGCGCTGCTTCCATGGACGTTGGCGTCGGTTACTTCAGTGACCCTGCTGGCCTCGAAGGCCTCGCCCATTTCCTAGAGCACATGCTGTTTTATGCCAGTGAAAAATACCCAGTGGAAGATAGCTACTCCAAGTATATTACTGAGCATGGAGGAAGCACCAATGCTTTTACATCTTCTGAACACACGAACTATTTTTTTGATGTTAACACAGATGGCTTTGAAGAGGCTCTGGACAGATTTGCTCAGTTCTTCACTAAACCATTGATGTCTGCTGATGCCACCATGAGGGAAATTAAAGCCGTTGACTCTGAAAACCAGAAGAATTTATTATCCGATGCATGGAGGATGAACCAGCTTCACAAACATCTCAGTGATGAAGATCATCCATATCATAAATTTAGCACAGGGAACTGGGATACTTTGGAAGTTAGACCAAAAGCAAAAGGATTAGACACAAGGAACGAGCTTCTCAAATTCTATGAAGAAAACTATTCTGCTAATCTAATGCATCTAGTAATATACACAAATGAAAGCCTTGATAAAATTCAAAACCTTGTAGAAGAAAAGTTCCAGGATATTAGAAACACCAACAAAAATTGTTTCCATGCTCGTGGTCAGCCATGCAAATCAGATCATTTGCAGATTGTTGTCAGGACTGTCCCAATAAAGCAAGGTCATAAATTGAGAATTGTATGGCCAGTAACCCCTGAAATTTGTCATTACACTGAAGGGCCATGCAGGTATCTTGGTCATCTCATTGGTCACGAAGGAGAAGGGTCTTTATATTACATCTTGAAAAAGTTGGGATGGGCTATGGGCTTGTCTGCGGGCGAATCAGATTGGAGTTTggacttttctttctttaatgtttttattgatCTTACTGATGCTGGCCATgAGCACATACAAGATATCATTGGGTTGTTGTTCAAATACATTGAGCTTCTACGACAGTCTGGTGTTTGCAAGTGGATTTTTGAAGAGCTTTCAGCGGTTTGTGAAACCAAGTTTCATTATCAGGACAAAATTCCTCCTAGTGATTATGTTGTTAATATTGCATCAAATATGCAGTTTTATCCTGTAAAAGATTGGTTGACAGGATCATCCTTGCCTTCTAAATTTAGCCCAAGTGTTATCCAGATGGTACTAGATCAGCTTTCTCCAGACAAAGTTCGAATCTTTTGGGAGTCCAAAAATTTTGAAGGGCTTACTGATAAGGTGGAGCCATGGTATGGAACTGCGTATTCCCTTGAAAAGATCACAGGCTCTGTGATTCAGGGGTGGGTGCTTTCTGCTCCTGATGAAAATATGCATCTTCCAGCTCCTAACAAATTCATTCCTACTGACTTGTCACTTAAAATTGTGCATGAAAAAGTAAAGCTTCCAGTTTTGCTAAGCAGGTCAACTTATTCAGCCTTATGGTACAAGCCAGATACATTGTTTTCTACACCCAAGGCTTATGTAAAGATTGATTTCAATTGCCCATATTCTGGAAACTCTCCCGAGGCTGAAGTTTTGACGGATATTTTCACAAAGTTATTGATGGATTACTTGAATGAATATGCTTATTATGCTCAGGTTGCTGGTTTGTATTACAGCATAAATCACACAGATAATGGTTTCCAGGTGACTCTCCTTGGTTATAATCACAAGTTAAGGATTCTACTTGAAActatagttgaaaaaattgCGACATTTGAAGTGAAAACTGACAGGTTTTCAGTTGTCAAGGAAATGGTAACCAAGGAATACCAGAATTTCAAGTACCAACAACCCTATCAGCAGGCTATGTACTATTGCTCTTTGATCTTACAAGATCAAACCTGGCCTTGGATAGAACAGCTAGACGTACTTCCTGCTCTTCAAGTTGAAGATCTTGCTGAATTTGTACCAGCAATGCTCTCCAGGACCTTTTTAGAGTTTTATATAGCAGGGAACATTGAAAGCCACGAAGCAGAGTCACTGGTTAAGCACATAGAAGATGTTCTCTTTAATTGTTCAAAACCTCTGTGCAAGCCTTTATTCTCATCTCAACATTTGACAAATCGGGTTGTTAAACTTGAAAGTGGCATGAATTTCTTCTACCCTTCAGAATGTCTTAATCCTGAAGATGAGAATTCTGCTCTTGTGCACTATATACAGGTAGGTCGAGATGACTTTAAGCTGAATGTTAAACTTCAGCTTTTTGCCCTTGTTGCAAAGCAACCAACCTTTCATCAGCTACGATCAGTTGAGCAGCTGGGGTACATTACTGTGCTCATGCAGAGGAATGATTGTGGTATACGTGGActacaatttattattcaatcCACAGTGAAGTCTCCTGGAAACATTGAGCAAAGGGTTGAGGCATTCCTGAAAATATTTGAGACCAAACTTCATGAGATGACAATTGATGAATTCAAGAGTAATGTAAATGCTTTGATAGATATGAAGCTAGAGAAACACAAAAATTTGAGGGAAGAATCAGCCTTTTTCTGGCGAGAGATTAAGGATGGTACTTTGAGGTTTGATAGGAGAGACTATGAGGTTGAAGCATTAAGGCAGCTCACTCCTCAAGAACTGATAGATTTCTTCAATGAATATGTCAAAGTTGGTGCACCTCGAAAGAAAACTTTAAGTGTACGAGTTCATGGGAATCGCCATTCTTCTGAATACAAGGCAGAAGCCTCAGAACCACACTTGGCTAAAATAGATAATATCTTTACTTTTAGAAGATCACAGTCTCTTTATGGTTCATTTAAAGGACTTTCTGGGCAGGTGAAGTTATAG 2895 0.3959 MAVGKEDAEIVKARIDKRDYRRVVLRNSLQVLLISDPDTDKCAASMDVGVGYFSDPAGLEGLAHFLEHMLFYASEKYPVEDSYSKYITEHGGSTNAFTSSEHTNYFFDVNTDGFEEALDRFAQFFTKPLMSADATMREIKAVDSENQKNLLSDAWRMNQLHKHLSDEDHPYHKFSTGNWDTLEVRPKAKGLDTRNELLKFYEENYSANLMHLVIYTNESLDKIQNLVEEKFQDIRNTNKNCFHARGQPCKSDHLQIVVRTVPIKQGHKLRIVWPVTPEICHYTEGPCRYLGHLIGHEGEGSLYYILKKLGWAMGLSAGESDWSLDFSFFNVFIDLTDAGHEHIQDIIGLLFKYIELLRQSGVCKWIFEELSAVCETKFHYQDKIPPSDYVVNIASNMQFYPVKDWLTGSSLPSKFSPSVIQMVLDQLSPDKVRIFWESKNFEGLTDKVEPWYGTAYSLEKITGSVIQGWVLSAPDENMHLPAPNKFIPTDLSLKIVHEKVKLPVLLSRSTYSALWYKPDTLFSTPKAYVKIDFNCPYSGNSPEAEVLTDIFTKLLMDYLNEYAYYAQVAGLYYSINHTDNGFQVTLLGYNHKLRILLETIVEKIATFEVKTDRFSVVKEMVTKEYQNFKYQQPYQQAMYYCSLILQDQTWPWIEQLDVLPALQVEDLAEFVPAMLSRTFLEFYIAGNIESHEAESLVKHIEDVLFNCSKPLCKPLFSSQHLTNRVVKLESGMNFFYPSECLNPEDENSALVHYIQVGRDDFKLNVKLQLFALVAKQPTFHQLRSVEQLGYITVLMQRNDCGIRGLQFIIQSTVKSPGNIEQRVEAFLKIFETKLHEMTIDEFKSNVNALIDMKLEKHKNLREESAFFWREIKDGTLRFDRRDYEVEALRQLTPQELIDFFNEYVKVGAPRKKTLSVRVHGNRHSSEYKAEASEPHLAKIDNIFTFRRSQSLYGSFKGLSGQVKL 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1486 964 PANTHER NARDILYSIN 5 964 - -
Ssu4g1486 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 725 952 IPR011249 GO:0046872
Ssu4g1486 964 Pfam Middle or third domain of peptidase_M16 378 657 IPR032632 -
Ssu4g1486 964 Pfam Peptidase M16 inactive domain 662 849 IPR007863 -
Ssu4g1486 964 Pfam Peptidase M16 inactive domain 193 369 IPR007863 -
Ssu4g1486 964 Gene3D - 499 725 - -
Ssu4g1486 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 484 708 IPR011249 GO:0046872
Ssu4g1486 964 Gene3D - 244 470 - -
Ssu4g1486 964 PANTHER ENZYME, PUTATIVE-RELATED 5 964 - -
Ssu4g1486 964 Coils Coil 220 240 - -
Ssu4g1486 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 247 483 IPR011249 GO:0046872
Ssu4g1486 964 Pfam Insulinase (Peptidase family M16) 31 166 IPR011765 -
Ssu4g1486 964 Gene3D - 2 239 - -
Ssu4g1486 964 ProSitePatterns Insulinase family, zinc-binding region signature. 51 74 IPR001431 GO:0004222|GO:0006508
Ssu4g1486 964 Gene3D - 726 959 - -
Ssu4g1486 964 SUPERFAMILY LuxS/MPP-like metallohydrolase 6 238 IPR011249 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1486 Ssu-Chr4 24887462 24915237 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1486 K01408 - gmx:100804856 1855.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1486 4 24887462 24915237 Ssu4g1486 4 24887462 24915237 ECH