Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01822 ATGATGATGATGATTATGGGTTCTCTGGCTCGACCAAACTCCCTCTTTTTCCGAACCAGTGGAAGGGGACTTACCCATAAAGTAGGAAGCAACAAGGTTGTGTCTTTTCAGAAGTTGACATGGAATGGTTCATTTCCCTCTGGGCAGCTCGAAGTTGAAGCAAGACAGAAGAACAACAAAGAAGCACCTGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTAGTTGAAATTTGGAATAATTCTAACATATTGCTGATCTTGCATGAAGAGGCCATATTGTTGTACTTATATATTGAGGCATTTGGTGGACAAGCTCTTACCTTCGCGGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCATGGGGAACTGTTGATGTATTAGTGAATAATGCAGGAATTACACGAGATGGGTTGTTGATGAGAATGAAAAAATCTCAGTGGCAGGAAGTTATTGATCTGAATCTTACTGGTGTTTTTCTCTGCACTCAGGCAGCATCAAAGATTATGACGATGAAAAAGAAGGTGACTGCTACCGGAAGGATAGTCAACATTACATCCGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAACTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGATTTATTGCATCTGATATGACTGCCTTGCTACGACCAGACATAGAGAAAAAAAGATTAGAGTTAATCCCCTTAGGAAGATTTGGTCAACCAGAAGAAGTTGCTGGACTTGTGGAATTTTTGGCTCTTAATCCTTCTGCTAATTACATCACTGGACAGAAGTTCAGTTTAGCTTTGTCACAGGTTGCTTCTTCAGATGAATTTGACATATTGCTGCCGACTCTTATGGTCACATAA 972 0.4208 MMMMIMGSLARPNSLFFRTSGRGLTHKVGSNKVVSFQKLTWNGSFPSGQLEVEARQKNNKEAPVVVVTGASRGIGRAIALSLVEIWNNSNILLILHEEAILLYLYIEAFGGQALTFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAASKIMTMKKKVTATGRIVNITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTALLRPDIEKKRLELIPLGRFGQPEEVAGLVEFLALNPSANYITGQKFSLALSQVASSDEFDILLPTLMVT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01822 323 Pfam Enoyl-(Acyl carrier protein) reductase 69 300 - -
Vimu11g01822 323 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 61 301 - -
Vimu11g01822 323 PRINTS Glucose/ribitol dehydrogenase family signature 138 149 IPR002347 -
Vimu11g01822 323 PRINTS Glucose/ribitol dehydrogenase family signature 215 234 IPR002347 -
Vimu11g01822 323 PRINTS Glucose/ribitol dehydrogenase family signature 189 205 IPR002347 -
Vimu11g01822 323 PRINTS Glucose/ribitol dehydrogenase family signature 269 289 IPR002347 -
Vimu11g01822 323 PRINTS Glucose/ribitol dehydrogenase family signature 64 81 IPR002347 -
Vimu11g01822 323 PRINTS Glucose/ribitol dehydrogenase family signature 236 253 IPR002347 -
Vimu11g01822 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 299 IPR036291 -
Vimu11g01822 323 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 202 230 IPR020904 GO:0016491
Vimu11g01822 323 Gene3D - 61 314 - -
Vimu11g01822 323 CDD BKR_SDR_c 64 298 - -
Vimu11g01822 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 215 234 IPR002347 -
Vimu11g01822 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 195 203 IPR002347 -
Vimu11g01822 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 149 IPR002347 -
Vimu11g01822 323 FunFam 3-oxoacyl-[acyl-carrier protein] reductase 58 304 - -
Vimu11g01822 323 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 63 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01822 Vimu-Chr11 25257727 25260622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01822 61 302 Acyl Lipid Metabolism Gene Families AT1G24360 63.968 2.98e-106 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01822 K00059 - gmx:100811718 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01822 11 25257727 25260622 Vimu11g01822 11 25257727 25260622 ECH
Vimu6g01539 6 14423915 14426999 Vimu11g01822 11 25257727 25260622 PCT