Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1356 ATGGGGCTTGATGATCAGCAGGAGAAGGATGCTAGAGACAAGGAAATTAATGATTGGCTTCCGATCACGTCCTCCAGGAACGCGAAATGGTGGTACTCTGCATTCCATAATGTGACCGCCATGGTTGGGGCTGGCGTCCTCAGTCTCCCTTACGCCATGGCAGGGCTTGGATGGGGTCCTGGGGTGGTCATTCTTGTTCTGTCATGGATCATCACATTGTACACTCTATGGCAAATGGTTGAGATGCATGAAATGGTTCCTGGGAAGAGGTTTGACAGATACCATGAGTTAGGGCAGCATGCCTTCGGCGAAAAGCTTGGCCTTTGGATTGTAGTGCCTCAACAGGTGATTGTAGAAGTGGGTGTGGACATTGTCTACATGATCACCGGAGGCAAATCCTTGCAGAAGTTCCATAACACAGTCTGTCCCGACTGCAAACCCATCAAGACAACCTATTTCATCATGATTTTTGCTTCTTGTCACTTTGTTCTCTCCCATTTGCCCAATTTCAACTCCATCAGTGGTGTCTCATTTGCTGCCGCAGTCATGTCCTTAACTTACTCAACTATTGCTTGGACAGCTTCGGTTCATAAGGGTGTCCAACCAGATGTGCAGTATTCATACACAGCTTCGACCACAACTGGAAGAGTCTTCACCTTCTTTAGCGCCTTGGGTGATGTAGCATTTGCCTATGCTGGTCACAACGTGGTGTTGGAGATCCAAGCAACAATTCCTTCCACCCCTGAGAAGCCTTCCAAGGGACCCATGTGGAAAGGGGTGATTTTTGCTTATATTGTTGTTGCCCTTTGCTACTTCCCTGTTGCTCTGATTGGATACTGGATGTTTGGGAACAGCGTTGCTGATAACATCCTCATCACACTCGAGAAACCACGATGGCTTATAGCAGGAGCCAATATGTTTGTTGTCATCCACGTTATTGGAAGCTACCAGATCTATGCGATGCCAGTGTTTGACATGTTGGAGACATTGTTGGTGAAGAATCTGAAATTCAGACCATCTTTCATGCTTCGTCTTATTACCCGCACCCTATATGTTGCTTTTACTATGTTCGTCGGTATACTGATCCCTTTCTTCGGCAGTCTCCTTGGATTCTTGGGAGGATTGGCTTTTGCCCCAACAACATACTTTCTCCCTTGTATCATGTGGCTTGCTATTTACAAACCCAGAAGGTTTAGCTTATCATGGTTTGCAAATTGGATCTGCATTGTGCTGGGTGTTTTATTGATGATTTTAGCTCCCATCGGCGCCCTAAGACAGATCATCCTTAATGCCAAGAACTTCAAATTCTTCTCGTGA 1317 0.4624 MGLDDQQEKDARDKEINDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAGLGWGPGVVILVLSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQVIVEVGVDIVYMITGGKSLQKFHNTVCPDCKPIKTTYFIMIFASCHFVLSHLPNFNSISGVSFAAAVMSLTYSTIAWTASVHKGVQPDVQYSYTASTTTGRVFTFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWKGVIFAYIVVALCYFPVALIGYWMFGNSVADNILITLEKPRWLIAGANMFVVIHVIGSYQIYAMPVFDMLETLLVKNLKFRPSFMLRLITRTLYVAFTMFVGILIPFFGSLLGFLGGLAFAPTTYFLPCIMWLAIYKPRRFSLSWFANWICIVLGVLLMILAPIGALRQIILNAKNFKFFS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1356 438 FunFam Lysine histidine transporter 1 23 433 - -
Vvi1g1356 438 Gene3D Amino acid/polyamine transporter I 23 432 - -
Vvi1g1356 438 PANTHER OS05G0424000 PROTEIN-RELATED 25 423 - -
Vvi1g1356 438 Pfam Transmembrane amino acid transporter protein 27 422 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1356 Vvi-Chr1 19746049 19748062 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1356 3 438 Organic Solute Cotransporters AT1G24400 79.128 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1356 - - vvi:100240857 867.84