Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g01820 ATGAGTCGTACGTTGGACGATAAAGCAGGAGTTCATGTTGGTCACAGACTGACAATGGAAGTGAAAAAAAAAATGACGACCGATACTAGTGCTGATAACGATGCCATCAATGCTTGGCTTCCGGTCACTGCTTCACGAAATGCCAAATGGTGGTACTCTGCCTTCCATAACCTCACCGCCATGGTGGGTGCCGGTGTCCTTACACTCCCTTATGCCATGTCTATGATGGGCTGGGGTCCAGGGAGTGTTATTCTCATCCTATCATGGATCATTACCTTGTTCACCCTATGGCAAATGGTTGAGATGCACGAAATGGTTCCTGGTGAGAGATTAGACAGGTATCACGAACTAGGGCAGAAAGCGTTTGGAGAGAAACTGGGTCTCTACATCGTGGTTCCTCTGCAGCTACTTGTTGAGGTTGGCACCTGCATTGTGTACATGGTCACGGGAGGGAACTCACTGAAGAAGTTTCATGAAACTGTTTGCCCCTCATGCCAAGAAATCAGGGGCTCCTATTGGATCGTGGTCTTTGCTTCTGTGAACTTCGTTCTCTCTCTCTGTCCAAACTTCAACTCTATTTCTGCAGTGTCTTTGGCCGCAGCAGTCATGTCTCTCGCTTACTCAACCATTGCTTGGGTGGCTTCCCTTAAGAAGGGCACTGTGCCGAATGTAGACTATGGGTACAAAGCACACAGCACTGCGGATGGCGTGTTCAATTTCATGACTGCTATGGGAGACGTAGCATTCGCTTATGCAGGTCACAATGTGGTTTTGGAAATCCAAGCAACAATACCTTCTACACCTGAGAAACCTTCCAAGATAGCAATGTGGAAAGGAGTCATAGTTGCATACTTGGGAGTTGGCTTCTGCTACTTTCCTGTGGCCTTCATTGGATACTATATCTTTGGAAACTCTGTCGATGATAATATCCTCATCACACTAGAGAAACCTTCTTGGCTTATTGCAGCAGCTAACATGTTTGTTATTATCCATGTTATTGGAGGCTACCAGGTATTCTCAATGCCCGTGTTTGATATGATGGAAACCTTTTTGGTGAAGCGAATGAAATTCCGTCCTTGTTTTACACTCCGCTTTGTTGCGCGCACTGTCTTTGTGTTATTGACAATGTTAGTTGGCATATGCATCCCCTTCTTTGGTTCTCTTCTTGGATTTTTAGGAGGGTTTGCCTTTGCCCCAACAACTTACTTTGTAAGTAAAAGCATGCAATTAGATCTACCGTGTATCATATGGCTTAAACTCTACAAACCAAGGAGATTTTCCTTATCTTGGATAGTGAATTGGACATGCATCGTGCTTGGGGTTCTGTTGGCGATACTAGCTCCAATTGGTTCATTAAGAAAAATCATTATTTCAGCTGAGCACTACAAGTTCTTTTCATGA 1401 0.4468 MSRTLDDKAGVHVGHRLTMEVKKKMTTDTSADNDAINAWLPVTASRNAKWWYSAFHNLTAMVGAGVLTLPYAMSMMGWGPGSVILILSWIITLFTLWQMVEMHEMVPGERLDRYHELGQKAFGEKLGLYIVVPLQLLVEVGTCIVYMVTGGNSLKKFHETVCPSCQEIRGSYWIVVFASVNFVLSLCPNFNSISAVSLAAAVMSLAYSTIAWVASLKKGTVPNVDYGYKAHSTADGVFNFMTAMGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVIVAYLGVGFCYFPVAFIGYYIFGNSVDDNILITLEKPSWLIAAANMFVIIHVIGGYQVFSMPVFDMMETFLVKRMKFRPCFTLRFVARTVFVLLTMLVGICIPFFGSLLGFLGGFAFAPTTYFVSKSMQLDLPCIIWLKLYKPRRFSLSWIVNWTCIVLGVLLAILAPIGSLRKIIISAEHYKFFS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g01820 466 Pfam Transmembrane amino acid transporter protein 47 450 IPR013057 -
Vimu11g01820 466 PANTHER OS05G0424000 PROTEIN-RELATED 48 455 - -
Vimu11g01820 466 FunFam Lysine histidine transporter 1 43 461 - -
Vimu11g01820 466 Gene3D Amino acid/polyamine transporter I 43 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g01820 Vimu-Chr11 25245841 25247922 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g01820 30 466 Organic Solute Cotransporters AT1G24400 71.854 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g01820 K26385 - gmx:100809608 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g01820 11 25245841 25247922 Vimu11g01820 11 25245841 25247922 ECH
Vimu6g01540 6 14435430 14437770 Vimu11g01820 11 25245841 25247922 PCT