LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste3g02697	AACAAGCCGGAAAGTAGCCTGCAGAAAGGTTATGGCTTTTCAGCGTTACAGTAGGAATGGTTCATTTCCCTGTGTCCAGCTTGAAGCTTCAGCAACCCAGAATATGGAAGCACCTGTGGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCACTCGGTAAAGCCGCTTGCAAGGTCTTGGTCAACTATGCTACCTCATCCACTCAAGCTCAAGAGGTTTCCAACTTGATTGAGGCGTTTGGTGGACAAGCTATTACCTTCGCTGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTGTTGGTAAATAATGCAGGAATTACTCGAGACGGTTTGTTAATGAGAATGAAGAAATCACAATGGCAGGATGTCATTGATCTGAATCTCACTGGTGTTTTTCTTTGCATGCAGGCAGCAGCAAAGATTATGACCATGAAAAAGAAGGGAAGGATAGTCAATATTACATCAGTTATTGGCCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTGGCCCCTGGGTTTATTGCATCAGATATGACCGCCAAGCTTCGACCAGACATTGAGAAAAAAAGAATGGAGTTAATTCCCTTAGGAAGACTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAGTCCTGCTGCTAATTACATCACTGGGCAGGTTTTCACTATTGATGGAGGTATGGCA	838	0.4487	MAFQRYSRNGSFPCVQLEASATQNMEAPVVVVTGASRGIGRAIALSLGKAACKVLVNYATSSTQAQEVSNLIEAFGGQAITFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQDVIDLNLTGVFLCMQAAAKIMTMKKKGRIVNITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAKLRPDIEKKRMELIPLGRLGQPEEVAGLVEFLALSPAANYITGQVFTIDGGMA	269

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste3g02697	269	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	29	268	IPR036291	-
	Pste3g02697	269	Gene3D	-	27	269	-	-
	Pste3g02697	269	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	157	165	IPR002347	-
	Pste3g02697	269	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	104	115	IPR002347	-
	Pste3g02697	269	PRINTS	Short-chain dehydrogenase/reductase (SDR) superfamily signature	177	196	IPR002347	-
	Pste3g02697	269	SMART	This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.	28	208	-	-
	Pste3g02697	269	PRINTS	Glucose/ribitol dehydrogenase family signature	29	46	IPR002347	-
	Pste3g02697	269	PRINTS	Glucose/ribitol dehydrogenase family signature	104	115	IPR002347	-
	Pste3g02697	269	PRINTS	Glucose/ribitol dehydrogenase family signature	151	167	IPR002347	-
	Pste3g02697	269	PRINTS	Glucose/ribitol dehydrogenase family signature	177	196	IPR002347	-
	Pste3g02697	269	PRINTS	Glucose/ribitol dehydrogenase family signature	198	215	IPR002347	-
	Pste3g02697	269	PRINTS	Glucose/ribitol dehydrogenase family signature	231	251	IPR002347	-
	Pste3g02697	269	FunFam	3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic	27	269	-	-
	Pste3g02697	269	ProSitePatterns	Short-chain dehydrogenases/reductases family signature.	164	192	IPR020904	GO:0016491
	Pste3g02697	269	Pfam	Enoyl-(Acyl carrier protein) reductase	34	268	-	-
	Pste3g02697	269	NCBIfam	3-oxoacyl-[acyl-carrier-protein] reductase	30	269	IPR011284	GO:0004316\|GO:0006633\|GO:0051287
	Pste3g02697	269	CDD	BKR_SDR_c	29	268	-	-
	Pste3g02697	269	PANTHER	3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE	24	268	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste3g02697	Pste-Chr3	19843298	19845319	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste3g02697	16	269	Acyl Lipid Metabolism Gene Families	AT1G24360	70.472	2.70e-130	370

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste3g02697	3	19843298	19845319	Pste3g02697	3	19843298	19845319	ECH