Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy20g0998 ATGGCTTCTCTCTCCGCTTCCAACTGCGTGGCCTTCCGAACTGCCAACTTCTCCTCCTCCGCCGCCGCCGATAACTGCAAAATCGGTCATCTCCGCCAATGGTCTCCGATTCCGACTAAGCTCTATCGCCCGCAAGGCCTCCGCTGCGGATCCAATGCTCCGTTTCGCTTATCCGGTGTGAGAGCGCAGGTTGCTACGCTTGAGGAGGCAGGAACAGTTGCGTCTCAGAATGTGGAAGCACCGGTTGTGGTGGTCACCGGAGCCTCCAGAGGTATCGGCCGTTCAATCGCGCTGGCATTGGGAAAAGCAGGTTGCAAGGTGCTTGTTAACTACGCAAGGTCATCTAAGGAAGCTGAGGAGGTTTCCAAGGAGATCGAGGCATCTGGTGGACAAGCTCTTACATTTGGGGGAGATGTTTCCAATGAAGCTCACGTGGAATCCATGATTAAAGCTGCGACCGATGCTTGGGGAACTGTTGATGTACTGATAAACAATGCAGGAATTACTAGAGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTCACAGGGGTTTTTCTTTGCACACAGGCTGCAGCTAAGATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTCTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCCGGAGTAATTGGCTTAACAAAAACTGTTGCAAAGGAGTATTCTAGCAGAAGCATCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGATATGACTGCAAAGCTAGGAGAAGACATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGGCGATATGGTCAACCAGAAGAAGTTGCTGGGCTGGTGGAATTTTTGGCTCTTAATCCTGCTGCTAGTTACATCACTGGGCAGGTGTTCACCATTGATGGAGGTATGGTGATGTAA 972 0.4805 MASLSASNCVAFRTANFSSSAAADNCKIGHLRQWSPIPTKLYRPQGLRCGSNAPFRLSGVRAQVATLEEAGTVASQNVEAPVVVVTGASRGIGRSIALALGKAGCKVLVNYARSSKEAEEVSKEIEASGGQALTFGGDVSNEAHVESMIKAATDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRSITVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPAASYITGQVFTIDGGMVM* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy20g0998 323 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 26 323 - -
Ahy20g0998 323 PRINTS Glucose/ribitol dehydrogenase family signature 82 99 IPR002347 -
Ahy20g0998 323 PRINTS Glucose/ribitol dehydrogenase family signature 204 220 IPR002347 -
Ahy20g0998 323 PRINTS Glucose/ribitol dehydrogenase family signature 251 268 IPR002347 -
Ahy20g0998 323 PRINTS Glucose/ribitol dehydrogenase family signature 157 168 IPR002347 -
Ahy20g0998 323 PRINTS Glucose/ribitol dehydrogenase family signature 230 249 IPR002347 -
Ahy20g0998 323 PRINTS Glucose/ribitol dehydrogenase family signature 284 304 IPR002347 -
Ahy20g0998 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 323 IPR036291 -
Ahy20g0998 323 CDD BKR_SDR_c 82 322 - -
Ahy20g0998 323 Pfam Enoyl-(Acyl carrier protein) reductase 87 321 - -
Ahy20g0998 323 Gene3D - 80 323 - -
Ahy20g0998 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 168 IPR002347 -
Ahy20g0998 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 218 IPR002347 -
Ahy20g0998 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 230 249 IPR002347 -
Ahy20g0998 323 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 81 261 - -
Ahy20g0998 323 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 26 323 - -
Ahy20g0998 323 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 83 322 IPR011284 GO:0004316|GO:0006633|GO:0051287
Ahy20g0998 323 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 217 245 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy20g0998 Ahy-Chr20 14592857 14596385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy20g0998 27 323 Acyl Lipid Metabolism Gene Families AT1G24360 69.360 1.32e-150 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy20g0998 K00059 - gmx:100809809 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy20g0998 20 14592857 14596385 Ahy20g0998 20 14592857 14596385 ECH
Ahy20g0998 20 14592857 14596385 Ahy10g0717 10 8134187 8136424 hybridization
Ahy20g0998 20 14592857 14596385 Ahy13g4454 13 144664126 144666981 PCT
Ahy20g0998 20 14592857 14596385 Ahy3g4172 3 141669313 141672070 PCT
Ahy13g4454 13 144664126 144666981 Ahy20g0998 20 14592857 14596385 PCT
Ahy3g4172 3 141669313 141672070 Ahy20g0998 20 14592857 14596385 PCT