Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1358 ATGTTTTCTCTGAGTGGTATGCCTTCAACTGCCTCAGTTTTATCAACATACACCACCTTTGCTGCATCAGCAATGCTGGTCCGGACTGTGGTGAGTGAAGTTGAGACCATGGCCAACCAGCTCATACCCCAACAACTCCGAGAGAAGATCGTTTCCAAACTTGGAGGCCTTCTTGGTAGTCACTCTTCTGAAATGGTCCTTGTCATTCAAGAGTTCAATGGGCTCTCTGTAAATCAAATTTATCAGGCTTCTGAACTCTATTTGCGCACCAAAATCACCCCCTCGGTCGGCCGGCTTAATGTTTCCAAAGGCCTGCGAGAGAAGAACCTCTCAGTCACTGTCAGCAAAGGAGAAATGGTTGTGGATGTTTTTGAAGGAATCGAACTCAGATGGCAATTGATTTGTGCTGAAACCCAGAAACCATCTTTTGACTATGACAGTGGTTCCATGGCGACTGAGAAGTCGGAACAGAGGTCAATTGAGCTCATTTTTCACAAGAAATACAAGGAGGTGGTCTTGAGCACATACCTGCCATATGTAATAGAAAGATCAAGAGCCATAAAAGAAGAAAACAAGGTGGTGAAGCTATGCTCACTAGGAAATTTCTCTGAAGATTACGATGGCCCTTGGGGATCAATCAATCTCAGCCATCCATGCACCTTTGACACATTAGCAATGGATCCGACGCTCAAGAAGGAACTGATTGCTGACTTGGACAGATTTGTGAGGAGAAGAGAGTTCTACCAGAAAGTGGGGAAGGCATGGAAACGAGGGTACTTGTTGTATGGCCCTCCAGGCACAGGGAAGTCGAGCTTGATTGCAGCCATGGCTAACTATCTCAAATTCAACATCTATGATTTGGAGCTTACAAGTCTCTGGAACAATTCAGACCTGAGAAGGCTGTTGGTCTCTACAGCAAATCGATCCATACTTGTCATCGAGGACATCGACTGTTCTGTTGAGTTGCAGAACCGACAAAATGGATCAGACAACAACACTGACAGCCAGTTAACTCTATCTGGGTTGCTTAATTTCATTGATGGACTATGGTCAAGCTGTGGTGATGAGAGGATCATCGTGTTCACAACAAATCATAAAGAAAGACTAGACCCTGCATTGTTGAGACCAGGGCGCATGGACATGCATATCCACATGTCCTACTGCACTCCCTCCGGATTCAAAATCCTAGCTGCCAACTACCTCAACATCAACACTCACCCTCTGTTTACTAAAATTGAGAGACTGATGACTGAGGTGGAGGTAACCCCAGCAGAGATTGCAGAAGAACTCTTGAAATGCGAAGAAGTCGATGTTGCTCTTGAAGGAATTATCAAATTCCTGGAAAGGAAGAAGATGCAGGTCGAACATGATGAAAAATCTAACGAGGGAGTAAAAGAAGTTGATGAACAAGAAGTGAGCAACGGGATTAAAGGAGATAAGATGGGTGTTAAGAGAAATAAAATGAAGAAGACAAGAAGGGCAAAGGGCAGACACTGA 1497 0.4456 MFSLSGMPSTASVLSTYTTFAASAMLVRTVVSEVETMANQLIPQQLREKIVSKLGGLLGSHSSEMVLVIQEFNGLSVNQIYQASELYLRTKITPSVGRLNVSKGLREKNLSVTVSKGEMVVDVFEGIELRWQLICAETQKPSFDYDSGSMATEKSEQRSIELIFHKKYKEVVLSTYLPYVIERSRAIKEENKVVKLCSLGNFSEDYDGPWGSINLSHPCTFDTLAMDPTLKKELIADLDRFVRRREFYQKVGKAWKRGYLLYGPPGTGKSSLIAAMANYLKFNIYDLELTSLWNNSDLRRLLVSTANRSILVIEDIDCSVELQNRQNGSDNNTDSQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDMHIHMSYCTPSGFKILAANYLNINTHPLFTKIERLMTEVEVTPAEIAEELLKCEEVDVALEGIIKFLERKKMQVEHDEKSNEGVKEVDEQEVSNGIKGDKMGVKRNKMKKTRRAKGRH* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1358 498 SMART AAA_5 255 389 IPR003593 GO:0016887
Vvi1g1358 498 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Vvi1g1358 498 Pfam ATPase family associated with various cellular activities (AAA) 260 386 IPR003959 GO:0005524|GO:0016887
Vvi1g1358 498 Gene3D - 384 455 - -
Vvi1g1358 498 Gene3D - 212 383 IPR027417 -
Vvi1g1358 498 PANTHER BCS1 AAA-TYPE ATPASE 16 452 - -
Vvi1g1358 498 CDD RecA-like_BCS1 234 385 - -
Vvi1g1358 498 MobiDBLite consensus disorder prediction 456 482 - -
Vvi1g1358 498 MobiDBLite consensus disorder prediction 456 498 - -
Vvi1g1358 498 MobiDBLite consensus disorder prediction 483 498 - -
Vvi1g1358 498 ProSitePatterns AAA-protein family signature. 357 375 IPR003960 GO:0005524|GO:0016887
Vvi1g1358 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 434 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1358 Vvi-Chr1 19761842 19763729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1358 232 383 Miscellaneous Gene Families AT2G29080 32.500 3.00e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1358 - K08900 vvi:100261340 976.081