Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02301 ATGATGATGACTATGGGTTCTCTGGCTCGACCAAACTCCCTCTTTTTCCGAACCAGTGGAAGGGCATTTACCCATAAAGTAGGGAGCAACAAGGTTGTGTCTTTTCAGAAGTTTACATGGAATGGTTCATTTCCCTCTGAGAAGCTTGAAGTTGAAGCAAGACAGAAGAACAAAGAAGCACCTGTTGTTGTAGTCACCGGAGCCTCCAGAGGCATTGGCCGTGCCATTGCACTTTCCTTAGGTAAAGCCGCTTGCAAGGTTTTGGTCAACTATACCAAGTCATCCACGCAAGCCGAGGAGGTTTCCAACTTGATTGAGGCATTTGGTGGACAAGCTCTTACCTTCGCTGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCATGGGGAACTGTTGATGTATTAGTGAATAATGCAGGAATTACACGAGATGGGTTGTTGATGAGAATGAAGAAATCCCAGTGGCAGGACGTTATTGATCTGAATCTTACTGGTGTTTTTCTCTGCATTCAGGCAGCAGCAAAGATTATGACTATGAAAAAGAAGGGAAGAATAGTTAACATTACATCCGTTATTGGTCAGGTTGGTAATGTTGGACAAGCCAACTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCAAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGATTTATTGCATCTGATATGACTGCCATGCTACGACCAGACATGGAGAAAAAAAGATTAGAGTTAATCCCCTTAGGAAGATTTGGTCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTTCTGCTAATTACATCACTGGACAGGTGTTCACCATTGATGGAGGTATGGCAATGTAA 912 0.4353 MMMTMGSLARPNSLFFRTSGRAFTHKVGSNKVVSFQKFTWNGSFPSEKLEVEARQKNKEAPVVVVTGASRGIGRAIALSLGKAACKVLVNYTKSSTQAEEVSNLIEAFGGQALTFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQDVIDLNLTGVFLCIQAAAKIMTMKKKGRIVNITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAMLRPDMEKKRLELIPLGRFGQPEEVAGLVEFLALNPSANYITGQVFTIDGGMAM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02301 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 148 IPR002347 -
Viun3g02301 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 190 198 IPR002347 -
Viun3g02301 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 229 IPR002347 -
Viun3g02301 303 Pfam Enoyl-(Acyl carrier protein) reductase 67 301 - -
Viun3g02301 303 CDD BKR_SDR_c 62 301 - -
Viun3g02301 303 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 62 302 IPR036291 -
Viun3g02301 303 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 59 302 - -
Viun3g02301 303 PRINTS Glucose/ribitol dehydrogenase family signature 62 79 IPR002347 -
Viun3g02301 303 PRINTS Glucose/ribitol dehydrogenase family signature 210 229 IPR002347 -
Viun3g02301 303 PRINTS Glucose/ribitol dehydrogenase family signature 137 148 IPR002347 -
Viun3g02301 303 PRINTS Glucose/ribitol dehydrogenase family signature 264 284 IPR002347 -
Viun3g02301 303 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Viun3g02301 303 PRINTS Glucose/ribitol dehydrogenase family signature 184 200 IPR002347 -
Viun3g02301 303 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 63 302 IPR011284 GO:0004316|GO:0006633|GO:0051287
Viun3g02301 303 Gene3D - 59 303 - -
Viun3g02301 303 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 60 303 - -
Viun3g02301 303 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 61 241 - -
Viun3g02301 303 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 197 225 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02301 Viun-Chr3 20343001 20348666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02301 59 303 Acyl Lipid Metabolism Gene Families AT1G24360 71.837 1.12e-129 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02301 K00059 - gmx:100811718 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g02301 3 20343001 20348666 Viun3g02301 3 20343001 20348666 ECH
Viun1g03432 1 41355765 41359434 Viun3g02301 3 20343001 20348666 PCT