Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1360 ATGCTCGGAGCTCAGCGCATAGCACCTGTCAACTCCGGTGTCGTCTGGCGAGCTCCGGCTCAGTTGGAGAGTAATGGAAGAGCCAGAAGAAGCTGGGTTCCAGGACACCGGTCGCCGGTGGCGGGAGCTCGGCCAATTCGGGCGGTGATCAGCAGTGAGGACAAGACTGTGGAAGGTGGTGCAAAGGCAGTGGAGAGCAAAGACGGTAATGTGTTGTTGTCGTCGTCGTCGTCTTCTTCTGCGAAGGGGATTGATGTGAGAGCGGTGATCACAATAAGGAAGAAGATGAAGGAGAAAATCACTGAGAAGATTGAGGACCAGTGGGAAGGTTTCATGAATGGGATAGGACAAGGGATCTCGATTCAGCTCGTCAGTGAAGAGATCGATCCTGTTACCATGTCAGGGAAGAGTGTGGAGTCTTTTGTACGAGGATGGTTGCCAAAGCCATCAAACCTTCCGTATATAGTTGAATATGCAGCAGACTTCACTGTCCCGTTAGACTTTGGATCCCCTGGAGCTGTTCTGATATCCAATCTTCATGGCAAGGAGTTCCACTTAATGGAGATTGTTATTCATGGCTTTGATGAAGGACCCATATTCTTTCCTGCAAATTCTTGGATACATTCGCGGAAGGATAATCCTGAAAGCAGAATTATTTTCAGAAATCAGGCTTATTTACCATCACAAACACCACCTGGCCTCAAAGATCTCCGGCGTGAAGACTTACTGAGTCTCCGTGGCAATAGAAAAGGGGAGAGAAAGCCACATGATAGAATCTATGATTACGCTCCTTATAATGACTTGGGGAATCCTGACAAGAGCGAGGATCTCGCTAGGCCTGTGCTAGCTGGTGAGGAAAGGCCATATCCCAGGCGCTGTAGAACTGGACGACCTCCAACCAGAACAGATCCATTGTGTGAGAGTAGATCAGAAAAGCCCCATCCTGTGTATGTACCTCGGGATGAAACTTTTGAGGAGATTAAACAGAACACTTTCTCAGCTGGAAGGTTGAAAGCTCTGCTCCACAATCTGATACCATCTATTGCTGCTACATTGTCAAGTTCAGACATTCCCTTCAAGTGTTTTTCCGATATTGACAAGCTATATAATGATGGTGTTCTCCTGAAGGATGAAGAAGATCAAAAAATGTCTGGAAATGTGTTCCCCTCCAATATGATGAAACAAGTATTGAGTGTTGGACAAAAGTTGTTGAAGTATGAAGTACCAGCTATTATCTCAAGGGATAGATTTGCATGGTTGCGGGATAATGAGTTTGCACGCCAAACTTTGGCTGGGGTCAACCCAGTGAATATCGAGATTCTAAAGGGATTTCCAATTGTAAGCAAACTAGATCCTGCAGTTTATGGCCCTCCGGAGTCGGCAATCACAAAAGAATTGATACAGCAAGAACTGAGTGGAATAACTGTTGAAGAGGCTATTGAGGACAAGAGATTGTTTATACTTGATTACCACGATATGCTTTTACCATTTATTGGGAAGATGAACACCTTACCAGAGAGGCAAGCATATGCGTCTAGAACAGTTTTCTTCTATACACGGACCGGCTTTTTGAGGCCAATTGCTATTGAGCTCTCACTTCCTCCAACACCTTCTTCACCTGGTAAGAAGCGTGTTTACACCCATGGACATGATGCTACAACCCATTGGATTTGGAAGCAAGCAAAAGCTCATGTTTGCTCGAATGATGCTGGTGTTCATCAACTAGTGAATCACTGGTTGAGGACTCATGCTTGCATGGAGCCTTATATAATTGCCACTCATAGGCAGCTTAGTGCAATGCACCCCATTAACAAGCTGCTCCGCCCTCATTTGCGCTACACATTAGAAATAAATGCACTAGCACGACAAAGTTTAATAAATGGAGGGGGAATTATTGAGGCTTGTTTCAGCCCGGGAAAGTATGCCATGGAGCTAAGCTCTGCTGCATACAAGAGTATGTGGCAATTTGACATGGAGGCACTGCCAGCAGATTTAATTCGGAGGGGCATGGCGGTGGAGGATCCTTCAATGCCATGTGGTGTTAAACTCTTGATTGAAGACTACCCTTATGCTGCAGATGGGCTCCTAATATGGTCTGCCATAAAAGAATGGGTAGAATCGTATGTTGATCACTTCTATTCTGAGCCTAACACTGTCACATCTGATTTGGAGCTCCAAGCCTGGTGGAACGAGATCAAAAATGAGGGTCACTATGACAAGCGTAATGAGTCCTGGTGGCCTAAGCTCAACACTAAAGAGCACTTATCTGGCATACTTACTACAATGATATGGATAGCTTCAGGTCAACATGCTGCAATAAACTTTGGGCAATACCCCTTTGGAGGATATGTGCCTAACCGTCCTACCCTCATGAGAAAACTCATCCCTCATGAAGATGATTCTGCCTATGAGAAGTTTCTTCTAAACCCACAGTCAACTTTCCTCTCATCTTTGCCAACGCAACTTCAGGCCACCAAAGTGATGGCTGTTCAGGACACCCTGTCCACTCACTCCCCAGATGAAGAGTATCTGGGTCAAACACACCATCTGCACAGCCACTGGATCAAGGATCCTGAAGTCTTGGACATGTTCAAGAAGTTCTCTGCTAAACTAGAGGAGATAGAGGAGATCATAAAAGGAAGAAATAAGAATATTCACCTTAAAAACAGAAATGGTGCCGGCATCCCTCCATATGAACTGCTTCTTCCCTCATCAGGTCCAGGGGTAACTGGCCGTGGTATTCCCAACAGCATTTCTATCTGA 2763 0.4557 MLGAQRIAPVNSGVVWRAPAQLESNGRARRSWVPGHRSPVAGARPIRAVISSEDKTVEGGAKAVESKDGNVLLSSSSSSSAKGIDVRAVITIRKKMKEKITEKIEDQWEGFMNGIGQGISIQLVSEEIDPVTMSGKSVESFVRGWLPKPSNLPYIVEYAADFTVPLDFGSPGAVLISNLHGKEFHLMEIVIHGFDEGPIFFPANSWIHSRKDNPESRIIFRNQAYLPSQTPPGLKDLRREDLLSLRGNRKGERKPHDRIYDYAPYNDLGNPDKSEDLARPVLAGEERPYPRRCRTGRPPTRTDPLCESRSEKPHPVYVPRDETFEEIKQNTFSAGRLKALLHNLIPSIAATLSSSDIPFKCFSDIDKLYNDGVLLKDEEDQKMSGNVFPSNMMKQVLSVGQKLLKYEVPAIISRDRFAWLRDNEFARQTLAGVNPVNIEILKGFPIVSKLDPAVYGPPESAITKELIQQELSGITVEEAIEDKRLFILDYHDMLLPFIGKMNTLPERQAYASRTVFFYTRTGFLRPIAIELSLPPTPSSPGKKRVYTHGHDATTHWIWKQAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPINKLLRPHLRYTLEINALARQSLINGGGIIEACFSPGKYAMELSSAAYKSMWQFDMEALPADLIRRGMAVEDPSMPCGVKLLIEDYPYAADGLLIWSAIKEWVESYVDHFYSEPNTVTSDLELQAWWNEIKNEGHYDKRNESWWPKLNTKEHLSGILTTMIWIASGQHAAINFGQYPFGGYVPNRPTLMRKLIPHEDDSAYEKFLLNPQSTFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQTHHLHSHWIKDPEVLDMFKKFSAKLEEIEEIIKGRNKNIHLKNRNGAGIPPYELLLPSSGPGVTGRGIPNSISI* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1360 920 Gene3D - 552 919 - -
Vvi1g1360 920 Gene3D - 226 327 - -
Vvi1g1360 920 ProSitePatterns Lipoxygenases iron-binding region signature 2. 600 610 IPR020834 GO:0016702|GO:0046872
Vvi1g1360 920 MobiDBLite consensus disorder prediction 246 265 - -
Vvi1g1360 920 Pfam Lipoxygenase 233 903 IPR013819 GO:0016702|GO:0046872
Vvi1g1360 920 SMART LH2_4 94 222 IPR001024 GO:0005515
Vvi1g1360 920 Pfam PLAT/LH2 domain 132 220 IPR001024 GO:0005515
Vvi1g1360 920 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 224 920 IPR013819 GO:0016702|GO:0046872
Vvi1g1360 920 MobiDBLite consensus disorder prediction 288 316 - -
Vvi1g1360 920 ProSitePatterns Lipoxygenases iron-binding region signature 1. 573 587 IPR020833 GO:0016702|GO:0046872
Vvi1g1360 920 SUPERFAMILY Lipoxigenase 226 920 IPR036226 -
Vvi1g1360 920 Gene3D - 417 549 - -
Vvi1g1360 920 MobiDBLite consensus disorder prediction 246 261 - -
Vvi1g1360 920 PRINTS Lipoxygenase signature 573 590 IPR013819 GO:0016702|GO:0046872
Vvi1g1360 920 PRINTS Lipoxygenase signature 555 572 IPR013819 GO:0016702|GO:0046872
Vvi1g1360 920 PRINTS Lipoxygenase signature 593 613 IPR013819 GO:0016702|GO:0046872
Vvi1g1360 920 ProSiteProfiles PLAT domain profile. 96 221 IPR001024 GO:0005515
Vvi1g1360 920 FunFam Lipoxygenase 552 919 - -
Vvi1g1360 920 PANTHER LIPOXYGENASE 103 920 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 217 238 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 831 845 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 288 307 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 443 462 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 356 377 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 256 272 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 510 534 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 404 420 IPR001246 GO:0016491
Vvi1g1360 920 PRINTS Plant lipoxygenase signature 191 209 IPR001246 GO:0016491
Vvi1g1360 920 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 85 225 IPR036392 GO:0005515
Vvi1g1360 920 Gene3D PLAT/LH2 domain 61 225 - -
Vvi1g1360 920 Gene3D - 328 416 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1360 Vvi-Chr1 19772966 19777638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1360 36 920 Acyl Lipid Metabolism Gene Families AT1G67560 65.217 0.0 1174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1360 K00454 - vvi:100244202 1843.17