Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02703 ATGATGATGATGATTATGGGTTCTCTGGCTCGACCAAACTCCCTCTTTTTCCGAACCAGTGGAAGAGGACTTACCCATAAAGTAGGGAGCAACAAGATTGTGTCTTTTCAGAAGTTGACATGGAATGGTTCATTTCCCTCTGGGCAGCTCGAAGTTGAAGCAAGACAGAACAACAACAAAGAAGCACCGGTTGTTGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTGGGCAAAGCCGCTTGCAAGGTTTTGGTCAACTATACCAAGTCATCCACGCAAGCTAAGGAGGTTTCCAACTTGATTGAGGCGTTTGGTGGACAAGCTCTTACCTTCGAGGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCATGGGGAACTGTTGATGTATTAGTGAATAATGCAGGAATTACACGAGATGGGTTGTTGATGAGAATGAAGAAATCTCAGTGGCAGGACGTTATTGATCTGAATCTTACTGGTGTTTTTCTCTGCATTCAGGCAGCAGCAAAGATTATGACGATGAAAAAGAAGGGAAGGATAGTCAACATTACATCCGTTATTGGTCAGGTTGGCAATGTTGGACAAGCTAACTATAGTGCTGCAAAGGCAGGGGTTAATGCAGTAGCCCCTGGATTTATTGCATCTGATATGACTGCCATGCTACGACCAGACATGGAGAAAAAAAGATTAGAGTTAATCCCCTTAGGAAGATTTGGTCAACCAGAAGAAGTTGCTGGACTTGTGGAATTTTTGGCCCTTAATCCTTCTGCTAATTACATCACTGGACAGGTGTTCACCATTGATGGAGGTATGGCAATGTAA 864 0.4398 MMMMIMGSLARPNSLFFRTSGRGLTHKVGSNKIVSFQKLTWNGSFPSGQLEVEARQNNNKEAPVVVVTGASRGIGRAIALSLGKAACKVLVNYTKSSTQAKEVSNLIEAFGGQALTFEGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQDVIDLNLTGVFLCIQAAAKIMTMKKKGRIVNITSVIGQVGNVGQANYSAAKAGVNAVAPGFIASDMTAMLRPDMEKKRLELIPLGRFGQPEEVAGLVEFLALNPSANYITGQVFTIDGGMAM 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02703 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 286 IPR036291 -
Vian1g02703 287 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 63 240 - -
Vian1g02703 287 Pfam short chain dehydrogenase 64 221 IPR002347 -
Vian1g02703 287 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 61 286 - -
Vian1g02703 287 PRINTS Glucose/ribitol dehydrogenase family signature 186 202 IPR002347 -
Vian1g02703 287 PRINTS Glucose/ribitol dehydrogenase family signature 248 268 IPR002347 -
Vian1g02703 287 PRINTS Glucose/ribitol dehydrogenase family signature 139 150 IPR002347 -
Vian1g02703 287 PRINTS Glucose/ribitol dehydrogenase family signature 64 81 IPR002347 -
Vian1g02703 287 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Vian1g02703 287 FunFam Short-chain dehydrogenase reductase 59 220 - -
Vian1g02703 287 Gene3D - 61 287 - -
Vian1g02703 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 150 IPR002347 -
Vian1g02703 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Vian1g02703 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 192 200 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02703 Vian-Chr1 40867131 40869765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02703 61 287 Acyl Lipid Metabolism Gene Families AT1G24360 66.531 1.12e-115 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02703 K00059 - gmx:100811718 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02703 1 40867131 40869765 Vian1g02703 1 40867131 40869765 ECH
Vian2g03165 2 52130606 52133616 Vian1g02703 1 40867131 40869765 PCT