Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip10g01053 ATGGCTTCTCTCTCCGCTTCCAACTGCGTGGCCTTCCGAACTGCCAACTTCTCCTCCTCCGCCGCCGCCGATAACTGCAAAATCGGTCATCTCCGCCAATGGTCTCCGATTCCGACTAAGCTCTATCGCCCGCAAGGCCTCCGCTGCGGATCCAATGCTCCGTTTCGCTTATCCGGTGTGAGAGCGCAGGTTGCTACGCTTGAGGAGGCAGGAACAGTTGCGTCTCAGAATGTGGAAGCACCGGTTGTGGTGGTCACCGGAGCCTCCAGAGGTATCGGCCGTTCAATCGCGCTGGCATTGGGAAAAGCAGGTTGCAAGGTGCTTGTTAACTACGCAAGGTCATCTAAGGAAGCTGAGGAGGTTTCCAAGGAGATCGAGGCATCTGGTGGACAAGCTCTTACATTTGGGGGAGATGTTTCCAATGAAGCTCACGTGGAATCCATGATTAAAGCTGCGACCGATGCTTGGGGAACTGTTGATGTACTGATAAACAATGCAGGAATTACTAGAGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTCACAGGGGTTTTTCTTTGCACACAGGCTGCAGCTAAGATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTCTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCCGGAGTAATTGGCTTAACAAAAACTGTTGCAAAGGAGTATTCTAGCAGAAGCATCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGATATGACTGCAAAGCTAGGAGAAGACATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGGCGATATGGTCAACCAGAAGAAGTTGCTGGGCTGGTGGAATTTTTGGCTCTTAATCCTGCTGCTAGTTACATCACTGGGCAGGTGTTCACCATTGATGGAGGTATGGTGATGTAA 972 0.4805 MASLSASNCVAFRTANFSSSAAADNCKIGHLRQWSPIPTKLYRPQGLRCGSNAPFRLSGVRAQVATLEEAGTVASQNVEAPVVVVTGASRGIGRSIALALGKAGCKVLVNYARSSKEAEEVSKEIEASGGQALTFGGDVSNEAHVESMIKAATDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRSITVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPAASYITGQVFTIDGGMVM 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip10g01053 323 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 217 245 IPR020904 GO:0016491
Aip10g01053 323 PRINTS Glucose/ribitol dehydrogenase family signature 82 99 IPR002347 -
Aip10g01053 323 PRINTS Glucose/ribitol dehydrogenase family signature 157 168 IPR002347 -
Aip10g01053 323 PRINTS Glucose/ribitol dehydrogenase family signature 204 220 IPR002347 -
Aip10g01053 323 PRINTS Glucose/ribitol dehydrogenase family signature 230 249 IPR002347 -
Aip10g01053 323 PRINTS Glucose/ribitol dehydrogenase family signature 251 268 IPR002347 -
Aip10g01053 323 PRINTS Glucose/ribitol dehydrogenase family signature 284 304 IPR002347 -
Aip10g01053 323 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 26 323 - -
Aip10g01053 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 82 323 IPR036291 -
Aip10g01053 323 CDD BKR_SDR_c 82 322 - -
Aip10g01053 323 Pfam Enoyl-(Acyl carrier protein) reductase 87 321 - -
Aip10g01053 323 Gene3D - 80 323 - -
Aip10g01053 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 168 IPR002347 -
Aip10g01053 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 210 218 IPR002347 -
Aip10g01053 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 230 249 IPR002347 -
Aip10g01053 323 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 81 261 - -
Aip10g01053 323 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 83 322 IPR011284 GO:0004316|GO:0006633|GO:0051287
Aip10g01053 323 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 26 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip10g01053 Aip-Chr10 13929942 13933438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip10g01053 27 323 Acyl Lipid Metabolism Gene Families AT1G24360 69.360 1.32e-150 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip10g01053 K00059 - gmx:100809809 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip10g01053 10 13929942 13933438 Aip10g01053 10 13929942 13933438 ECH
Aip10g01053 10 13929942 13933438 Aip03g04939 03 134002684 134005480 PCT