Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1353 ATGGCTGCTGCTGCCGGATCCGCCGTCATCACGTTCAAATCCACCGGAGGAGTTGTCACGAAGCCTGGAGGTTCCGCCGATCGACGAGTTGCAACCTTTCAGCATTGCTCTCCGGTTTCTGGCGGAATTGGATCCGCTCAGCTCCGAGCTTCGATTGGCCTTCAGTGCAGATCGAGGAGTTCGTTTGCTTCTTCCGGTGTAAGAGCTCAGGTTGCCACTATTGAACAAGCAAGTGCTGAAGCAGCACAAACCGTGGAAGCCCCTGTTGTTGTTGTGACTGGAGCTTCTAGAGGTATCGGAAAAGCAATTGCATTGGCCTTGGGGAAAGCTGGTTGTAAGGTCTTGGTTAACTATGCTAGGTCATCAAGGGAAGCTGAAGAAGTTTCCAAGGAGATCGAGGCATGTGGTGGTCATGCTATTACTTTTGGAGGAGACGTTTCAAAAGAGGCTGATGTGGAAGCAATGATTAAAGCTGCAGTTGATGCATGGGGAACAGTTGATATATTGATAAACAATGCAGGAATTACTCGGGATGGGTTGTTGATGAGAATGAAGACACCACAATGGCAGGAGGTCATTAATTTGAATCTCACAGGTGTATTCCTCTGCACACAGGCAGCAGCTAAAATTATGATGAAGAAGAGAAAGGGAAGGATAATTAATATAGCATCAGTTGTTGGTCTGGTTGGCAATGTTGGGCAAGCTAATTACAGTGCTGCGAAGGCAGGAGTAATTGGCCTTACAAAGACTGTTGCAAAGGAGTATGCTGGCAGAAACATTAATGTTAATGCTGTTGCCCCTGGGTTCATTGCATCAGATATGACTGCTAAGCTTGGGGAAGACATTGAGAAGAAAATCTTGGAAACCATCCCCTTGGGAAGGTATGGCCAACCAGAAGAAGTTGCTGGACTGGTTGAGTTTTTGGCCCTCGATCCTGCAGCCAGTTACATTACAGGACAGGTGTTCACTATCGATGGAGGAATGGTGATGTAG 993 0.4733 MAAAAGSAVITFKSTGGVVTKPGGSADRRVATFQHCSPVSGGIGSAQLRASIGLQCRSRSSFASSGVRAQVATIEQASAEAAQTVEAPVVVVTGASRGIGKAIALALGKAGCKVLVNYARSSREAEEVSKEIEACGGHAITFGGDVSKEADVEAMIKAAVDAWGTVDILINNAGITRDGLLMRMKTPQWQEVINLNLTGVFLCTQAAAKIMMKKRKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYAGRNINVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGQPEEVAGLVEFLALDPAASYITGQVFTIDGGMVM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1353 330 CDD BKR_SDR_c 89 329 - -
Vvi1g1353 330 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 85 329 - -
Vvi1g1353 330 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 90 329 IPR011284 GO:0004316|GO:0006633|GO:0051287
Vvi1g1353 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 237 256 IPR002347 -
Vvi1g1353 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 175 IPR002347 -
Vvi1g1353 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 217 225 IPR002347 -
Vvi1g1353 330 PRINTS Glucose/ribitol dehydrogenase family signature 164 175 IPR002347 -
Vvi1g1353 330 PRINTS Glucose/ribitol dehydrogenase family signature 211 227 IPR002347 -
Vvi1g1353 330 PRINTS Glucose/ribitol dehydrogenase family signature 89 106 IPR002347 -
Vvi1g1353 330 PRINTS Glucose/ribitol dehydrogenase family signature 258 275 IPR002347 -
Vvi1g1353 330 PRINTS Glucose/ribitol dehydrogenase family signature 237 256 IPR002347 -
Vvi1g1353 330 PRINTS Glucose/ribitol dehydrogenase family signature 291 311 IPR002347 -
Vvi1g1353 330 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 88 268 - -
Vvi1g1353 330 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 224 252 IPR020904 GO:0016491
Vvi1g1353 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 89 330 IPR036291 -
Vvi1g1353 330 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 87 330 - -
Vvi1g1353 330 Gene3D - 87 330 - -
Vvi1g1353 330 Pfam Enoyl-(Acyl carrier protein) reductase 94 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1353 Vvi-Chr1 19723428 19728410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1353 28 330 Acyl Lipid Metabolism Gene Families AT1G24360 69.307 5.55e-154 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1353 K00059 - vvi:100257887 614.764