Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02477 ATGGCTTCTCTTACCGGATCCAATTGCGTCGCTCTCCGAGCCGCCACTTTTGCCGCCGCCGGTAACCGTAAAATCAGTCAGATCCGCCAATGGTCTCCGACCATCAATCATCTCCGTCCATTTTCTCCTCTTCACTGCAGATCCAATACTTCGTTTAACTCCACCGTTGTGAGAGCGCAGGTTGCTACTGCGGAGGAAGCTGTTACCGGAGCGGTTCAGAAAGTGGAAGCGCCGGTTGTGATTGTCACCGGAGCTTCCAGAGGTATTGGCAGAGCAATTGCGCTAGCGTTAGGTAAAGCTGGTTGCAAGGTATTGGTCAACTATGCTAGATCATCTAAGGAAGCTGAAGAGGTTTCCAAAGAGATTGAGGCACTGGGTGGACAGGCTTTAACATTTGGTGGAGATGTTTCTAATGAAGCTGATGTGAACTCTATGATTAAAACTGCAGTAGATGCTTGGGGAACTGTTGATGTATTGATAAACAATGCTGGAATAACTAGAGATGGTTTATTGATGAGAATGAAGAAACCTCAGTGGCAGGAGGTTATTGATCTAAATCTCACCGGTGTTTTTCTTTCCACGCAGGCAGCTGCTAAAATTATGATGAAGAATAAGAAGGGAAGGATAATCAATATTTCATCAGTTGTTGGTTTGATTGGCAATGCTGGACAAGCCAATTATGCTGCTGCAAAGGCAGGAGTAATTGGCCTGACAAAATCTGTTGCAAAGGAATATTCTAGCAGAGGCATCACTGTTAATGCTGTTGCTCCAGGATTTATTGCATCTGACATGACTGCCAAGTTAGGAGAAGACATAGAAAAAAAGATTTTAGAGGCAATTCCATTAGGTCGTTATGGCCAACCAGAAGAAGTTGCTGGACTAGTGGAGTTCTTGGCCCTTAATCAAGCTTCCAGCTACATCACTGGACAGGTTTTCACCATTGATGGAGGCATGGTGATGTAA 963 0.4496 MASLTGSNCVALRAATFAAAGNRKISQIRQWSPTINHLRPFSPLHCRSNTSFNSTVVRAQVATAEEAVTGAVQKVEAPVVIVTGASRGIGRAIALALGKAGCKVLVNYARSSKEAEEVSKEIEALGGQALTFGGDVSNEADVNSMIKTAVDAWGTVDVLINNAGITRDGLLMRMKKPQWQEVIDLNLTGVFLSTQAAAKIMMKNKKGRIINISSVVGLIGNAGQANYAAAKAGVIGLTKSVAKEYSSRGITVNAVAPGFIASDMTAKLGEDIEKKILEAIPLGRYGQPEEVAGLVEFLALNQASSYITGQVFTIDGGMVM 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02477 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 214 242 IPR020904 GO:0016491
Vifa2g02477 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 79 320 IPR036291 -
Vifa2g02477 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 227 246 IPR002347 -
Vifa2g02477 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 207 215 IPR002347 -
Vifa2g02477 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 165 IPR002347 -
Vifa2g02477 320 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 77 320 - -
Vifa2g02477 320 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 74 319 - -
Vifa2g02477 320 PRINTS Glucose/ribitol dehydrogenase family signature 248 265 IPR002347 -
Vifa2g02477 320 PRINTS Glucose/ribitol dehydrogenase family signature 201 217 IPR002347 -
Vifa2g02477 320 PRINTS Glucose/ribitol dehydrogenase family signature 154 165 IPR002347 -
Vifa2g02477 320 PRINTS Glucose/ribitol dehydrogenase family signature 281 301 IPR002347 -
Vifa2g02477 320 PRINTS Glucose/ribitol dehydrogenase family signature 79 96 IPR002347 -
Vifa2g02477 320 PRINTS Glucose/ribitol dehydrogenase family signature 227 246 IPR002347 -
Vifa2g02477 320 CDD BKR_SDR_c 79 319 - -
Vifa2g02477 320 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 78 263 - -
Vifa2g02477 320 Pfam Enoyl-(Acyl carrier protein) reductase 84 318 - -
Vifa2g02477 320 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 80 319 IPR011284 GO:0004316|GO:0006633|GO:0051287
Vifa2g02477 320 Gene3D - 77 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02477 Vifa-Chr2 649974164 649976966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02477 2 320 Acyl Lipid Metabolism Gene Families AT1G24360 67.398 1.92e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g02477 K00059 - gmx:100809809 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02477 2 649974164 649976966 Vifa2g02477 2 649974164 649976966 ECH
Vifa2g02477 2 649974164 649976966 Vifa2g02477 2 649974164 649976966 PCT