Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0416 ATGGTAATTAACATCTTTCCGCAGACTCCTAAACACGAAAAACACGTCACAGAGACAGAGTCACACTTCGTTTGCATCGACAGCTCTCACTCTCTCCGGAGCTCCCAAAGCTCACACACACTGCCAACACTGCTAACTAACACCCAACTGAATCCCCCCTCTTTAGAAACCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGCTTCTTCTCTCATTTCCCATTCTCGCGTCCTTCTCGGAAGAACAGTTATGGCTTCTCTCTCCGCTTCCAACTGCGTGGCCTTCCGAACTGCCAACTTCTCCTCCTCCGCCGCCGCCGATAACTGCAAAATCGGTCATCTCCGCCAATGGTCTCCGATTCCGACTAAGCTCTATCGCCCGCAAGGCCTCCGCTGCGGATCCAATGCTCCGTTTCGCTTATCCGGTGTGAGAGCGCAGGTTGCTACGCTTGAGGAGGCAGGAACAGTTGCGTCTCAGAATGTGGAAGCACCGGTTGTGGTGGTCACCGGAGCCTCCAGAGGTATCGGCCGTTCAATCGCGCTGGCATTGGGAAAAGCAGGTTGCAAGGTGCTTGTTAACTACGCAAGGTCATCTAAGGAAGCTGAGGAGGTTTCCAAGGAGATCGAGGCATCTGGTGGACAAGCTCTTACATTTGGGGGAGATGTTTCCAATGAAGCTCACGTGGAATCCATGATTAAAGCTGCGACCGATGCTTGGGGAACTGTTGATGTACTGATAAACAATGCAGGAATTACTAGAGATGGTTTGTTAATGAGAATGAAGAAATCTCAATGGCAGGAGGTTATTGATCTAAATCTCACAGGGGTTTTTCTTTGCACACAGGCTGCAGCTAAGATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTCTGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCCGGAGTAATTGGCTTAACAAAAACTGTTGCAAAGGAGTATTCTAGCAGAAGCATCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGATATGACTGCAAAGCTAGGAGAAGACATTGAGAAAAAGATTTTGGAGACAATCCCATTAGGGCGATATGGTCAACCAGAAGAAGTTGCTGGGCTGGTGGAATTTTTGGCTCTTAATCCTGCTGCTAGTTACATCACTGGGCAGGTGTTCACCATTGATGGAGGTATGGTGATGTAA 1227 0.48 MVINIFPQTPKHEKHVTETESHFVCIDSSHSLRSSQSSHTLPTLLTNTQLNPPSLETNLSLSLSLSLSLASSLISHSRVLLGRTVMASLSASNCVAFRTANFSSSAAADNCKIGHLRQWSPIPTKLYRPQGLRCGSNAPFRLSGVRAQVATLEEAGTVASQNVEAPVVVVTGASRGIGRSIALALGKAGCKVLVNYARSSKEAEEVSKEIEASGGQALTFGGDVSNEAHVESMIKAATDAWGTVDVLINNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRSITVNAVAPGFIASDMTAKLGEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPAASYITGQVFTIDGGMVM* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0416 408 PRINTS Glucose/ribitol dehydrogenase family signature 336 353 IPR002347 -
Amo20g0416 408 PRINTS Glucose/ribitol dehydrogenase family signature 315 334 IPR002347 -
Amo20g0416 408 PRINTS Glucose/ribitol dehydrogenase family signature 167 184 IPR002347 -
Amo20g0416 408 PRINTS Glucose/ribitol dehydrogenase family signature 242 253 IPR002347 -
Amo20g0416 408 PRINTS Glucose/ribitol dehydrogenase family signature 369 389 IPR002347 -
Amo20g0416 408 PRINTS Glucose/ribitol dehydrogenase family signature 289 305 IPR002347 -
Amo20g0416 408 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 167 408 IPR036291 -
Amo20g0416 408 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 110 408 - -
Amo20g0416 408 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 110 408 - -
Amo20g0416 408 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 302 330 IPR020904 GO:0016491
Amo20g0416 408 Gene3D - 165 408 - -
Amo20g0416 408 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 295 303 IPR002347 -
Amo20g0416 408 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 315 334 IPR002347 -
Amo20g0416 408 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 242 253 IPR002347 -
Amo20g0416 408 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 166 346 - -
Amo20g0416 408 Pfam Enoyl-(Acyl carrier protein) reductase 172 406 - -
Amo20g0416 408 CDD BKR_SDR_c 167 407 - -
Amo20g0416 408 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 168 407 IPR011284 GO:0004316|GO:0006633|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0416 Amo-Chr20 5214526 5218183 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0416 112 408 Acyl Lipid Metabolism Gene Families AT1G24360 69.360 6.39e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0416 K00059 - gmx:100809809 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0416 20 5214526 5218183 Amo20g0416 20 5214526 5218183 ECH