Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04513 ATGTTGCTGACAAGGTTGCTAATGGAGTCAAACACAGTGTCATTGACAGAGCTTGGACGACTATTGATGTCCCAGACTATTAAAGTAAGAATTACTATCCCATTGCCTCTTTATGTTTTGTGTTCTGGAATTGCTGCCCACTGCCGCACCCACCTCCTACGCCAATGGGTTCCAATCCACGCAACCAAACTCAACCCCCTCTCTCTACGCTGCAACACATCCTCCTCTCCCACTGCTGTAGGAGGTGTAAGAGCTCAGGTTGCAACTGAGGCGGAAGCAGGAACTCCAGCTAGCCAGAATGCGGAAGCGCCCGTTGTAGTGGTCACCGGAGCTTCCAGAGGCATCGGTCGAGCAATTGCTCTCTCCTTGGGTAAATCTGGTTGCAAGGTGCTGGTCAACTACGCAAGGTCATCCAAGGAAGCCGAGGAGGTTTCCAAGCAGATCCAGGAATTCGGTGGACAAGCTCTTACATTTGGTGGAGATGTTTCCAATGAGGCTGATGTGGAGTCTATGATTAAAACTGCTGTTGATACTTGGGGAACAGTTGACGTGTTGGTAAATAATGCAGGAATTACTCGAGATGGCTTGTTGATGCGGATGAAGAAATCACAATGGCAGGAGGTTATTGATCTAAATCTCACTGGTGTTTTTCTTTGCACCCAGGCAGCAGCTAAAATTATGATGAAGAAGAAGAAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTTTGGTTGGGAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCAGGAGTAATTGGCCTGACAAAAACAGTTGCAAAGGAATATGCTAGCAGAAGCCTCACTGTTAATGCAGTTGCCCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAAGCGAAGACATTGAGAAAAAGATTCTGGAGACAATTCCTTTAGGGAGATATGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCCCTCAATCCTTCTGCTAGTTACATCACTGGCCAGGTGTTCACTATTGATGGAGGCATGGTGATTGTTATACTTGGTGACTTAATCCTATCATTTTTGTTTAGCTATTAA 1083 0.458 MLLTRLLMESNTVSLTELGRLLMSQTIKVRITIPLPLYVLCSGIAAHCRTHLLRQWVPIHATKLNPLSLRCNTSSSPTAVGGVRAQVATEAEAGTPASQNAEAPVVVVTGASRGIGRAIALSLGKSGCKVLVNYARSSKEAEEVSKQIQEFGGQALTFGGDVSNEADVESMIKTAVDTWGTVDVLVNNAGITRDGLLMRMKKSQWQEVIDLNLTGVFLCTQAAAKIMMKKKKGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYASRSLTVNAVAPGFIASDMTAKLSEDIEKKILETIPLGRYGQPEEVAGLVEFLALNPSASYITGQVFTIDGGMVIVILGDLILSFLFSY 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04513 360 TIGRFAM 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 106 345 IPR011284 GO:0004316|GO:0006633|GO:0051287
Adu03g04513 360 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 240 268 IPR020904 GO:0016491
Adu03g04513 360 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 253 272 IPR002347 -
Adu03g04513 360 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 191 IPR002347 -
Adu03g04513 360 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 233 241 IPR002347 -
Adu03g04513 360 CDD BKR_SDR_c 105 345 - -
Adu03g04513 360 PANTHER 3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE 4 65 346 - -
Adu03g04513 360 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 104 284 - -
Adu03g04513 360 PRINTS Glucose/ribitol dehydrogenase family signature 180 191 IPR002347 -
Adu03g04513 360 PRINTS Glucose/ribitol dehydrogenase family signature 274 291 IPR002347 -
Adu03g04513 360 PRINTS Glucose/ribitol dehydrogenase family signature 227 243 IPR002347 -
Adu03g04513 360 PRINTS Glucose/ribitol dehydrogenase family signature 307 327 IPR002347 -
Adu03g04513 360 PRINTS Glucose/ribitol dehydrogenase family signature 105 122 IPR002347 -
Adu03g04513 360 PRINTS Glucose/ribitol dehydrogenase family signature 253 272 IPR002347 -
Adu03g04513 360 Pfam Enoyl-(Acyl carrier protein) reductase 110 344 - -
Adu03g04513 360 Gene3D - 103 346 - -
Adu03g04513 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 105 347 IPR036291 -
Adu03g04513 360 PANTHER SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER 65 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04513 Adu-Chr3 134500272 134504023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g04513 53 346 Acyl Lipid Metabolism Gene Families AT1G24360 69.388 8.18e-149 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g04513 K00059 - gmx:100809809 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g04513 03 134500272 134504023 Adu03g04513 03 134500272 134504023 ECH
Adu10g00718 10 8763907 8767700 Adu03g04513 03 134500272 134504023 PCT