Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g01739 ATGTTGATACTTGTGTTTTTGCAGGGAAGGATAATCAATATTGCATCAGTTGTTGGTTTGGTTGGGAATGTTGGACAAGCCAATTATAGTGCTGCAAAAGCCGGAGTAATTGGCCTGACAAAAACTGTTGCAAAGGAATATTCTAGTAGAAACATCACTGTTAATGCTGTTGCTCCAGGGTTTATTGCATCTGACATGACTGCCAAGCTAGGAAAAGATATTGAGAAAAAGATTTTGGAGACAATACCGTTAGGAAGATATGGCCAACCAGAAGAAGTTGCTGGACTGGTGGAATTCTTGGCTCTTAATCAAGCTGCTAGTTACATCACTGGGCAGGTCATATATTTATTTAGGTCTTGTTAG 363 0.3967 MLILVFLQGRIINIASVVGLVGNVGQANYSAAKAGVIGLTKTVAKEYSSRNITVNAVAPGFIASDMTAKLGKDIEKKILETIPLGRYGQPEEVAGLVEFLALNQAASYITGQVIYLFRSC. 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g01739 120 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 16 44 IPR020904 GO:0016491
Seca6g01739 120 Pfam Enoyl-(Acyl carrier protein) reductase 8 115 - -
Seca6g01739 120 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 8 114 - -
Seca6g01739 120 PRINTS Glucose/ribitol dehydrogenase family signature 29 48 IPR002347 -
Seca6g01739 120 PRINTS Glucose/ribitol dehydrogenase family signature 83 103 IPR002347 -
Seca6g01739 120 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
Seca6g01739 120 PRINTS Glucose/ribitol dehydrogenase family signature 3 19 IPR002347 -
Seca6g01739 120 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 115 IPR036291 -
Seca6g01739 120 Gene3D - 7 117 - -
Seca6g01739 120 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 29 48 IPR002347 -
Seca6g01739 120 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 9 17 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g01739 Seca-Chr6 72156553 72157080 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g01739 8 112 Acyl Lipid Metabolism Gene Families AT1G24360 77.143 7.65e-53 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g01739 K00059 - lja:Lj0g3v0101659.1 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g01739 6 72156553 72157080 Seca6g01739 6 72156553 72157080 ECH
Seca6g01739 6 72156553 72157080 Seca6g01739 6 72156553 72157080 PCT