Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01282 ATGATGGGTTCTCTGGCTCGACCAAACTCACTCTTTTTCCGAACCAGAGGACCCGGACCCACCCGGAAAGTACCAAGTGAGGTTTTGGCTTTTCAGCGTTCTACTTCAAATGGTTCATTTCCCTCTGTGCAGCTTGAACTTGAAGCAAGCCAGAAGAACATGGAAGCGCCTGTTGTTGTAGTCACCGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTAGGTAAAGCCGCATGCAAGGTCCTGGTCAACTATGCCAGGTCATCCAGGCAAGCTGAGGAGGTGTCCAACTTGATTGAGGCGTTTGGTGGACAAGCTCTTACCTTCGCGGGAGATGTTTCAAATGAGGCTGATGTGGAGTCTATGATTAAGACTGCAGTTGATGCTTGGGGAACTGTTGATGTATTGGTAAATAATGCAGGAATTACTCGAGATGGTTTGTTAATGAGAATGAAGAAATCACAATGGCAGGACGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCATGCAGGTGAATATTTTACTGGTACTTTTGCAGGGAAGGATAATCAATATTACATCAGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGAGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGGTTTATTGCATCTGATATGACTGCTAAGCTACGACCAGACATTGAGAAAAAAAGATTGGAGTTAATCCCCTTAGGAAGACTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTGCTGCTAATTACATCACTGGGCAGGTTTTCACTATTGATGGAGGTATGGCGATGTGA 894 0.453 MMGSLARPNSLFFRTRGPGPTRKVPSEVLAFQRSTSNGSFPSVQLELEASQKNMEAPVVVVTGASRGIGRAIALSLGKAACKVLVNYARSSRQAEEVSNLIEAFGGQALTFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQDVIDLNLTGVFLCMQVNILLVLLQGRIINITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAKLRPDIEKKRLELIPLGRLGQPEEVAGLVEFLALNPAANYITGQVFTIDGGMAM 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01282 297 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 53 296 - -
Pumo6g01282 297 Gene3D - 39 297 - -
Pumo6g01282 297 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 57 235 - -
Pumo6g01282 297 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 59 296 IPR011284 GO:0004316|GO:0006633|GO:0051287
Pumo6g01282 297 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 56 297 - -
Pumo6g01282 297 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 58 296 IPR036291 -
Pumo6g01282 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Pumo6g01282 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 184 192 IPR002347 -
Pumo6g01282 297 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 223 IPR002347 -
Pumo6g01282 297 CDD BKR_SDR_c 58 295 - -
Pumo6g01282 297 PRINTS Glucose/ribitol dehydrogenase family signature 204 223 IPR002347 -
Pumo6g01282 297 PRINTS Glucose/ribitol dehydrogenase family signature 178 194 IPR002347 -
Pumo6g01282 297 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Pumo6g01282 297 PRINTS Glucose/ribitol dehydrogenase family signature 225 242 IPR002347 -
Pumo6g01282 297 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Pumo6g01282 297 PRINTS Glucose/ribitol dehydrogenase family signature 258 278 IPR002347 -
Pumo6g01282 297 Pfam Enoyl-(Acyl carrier protein) reductase 63 295 - -
Pumo6g01282 297 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 191 219 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01282 Pumo-Chr6 16995949 16998574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g01282 11 297 Acyl Lipid Metabolism Gene Families AT1G24360 64.014 1.65e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01282 K00059 - gmx:100811718 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01282 6 16995949 16998574 Pumo6g01282 6 16995949 16998574 ECH
Pumo1g00431 1 5971298 5975523 Pumo6g01282 6 16995949 16998574 PCT