Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu3g02600 ATGACGATTGATACTGCTGATAGCAATGCCATCAATGATTGGCTTCCTGTCACTGCCTCCCGCAATGCCAAATGGTGGTACTCTGCGTTCCACAACCTCACGGCCATGGTTGGTGCCGGTGTCCTCACCCTTCCTTATGCCATGTCTATGATGGGCTGGGGTCCAGGGACAGTTATTCTGATCTTGTCATGGATCATCACCTTATTTACCCTATGGCAAATGGTTGAGATGCACGAAATGGTGCCTGGCGTGAGATTCGACAGGTATCACGAACTAGGGCAGCAAGCCTTTGGAGAGAAGTTGGGTCTCTATATCGTGGTTCCTCAACAGCTACTAGTTGAGGTTGGAACATGCATTGTGTACATGGTGACAGGAGGCACCTCACTGAAGAAGTTTCATGAGACTGTTTGCCCCACATGCCAAAAAATTAGGAGCGCCTATTGGATTGTTATCTTCGGTTCTGTAAACTTTCTTCTCTCTCTCTGTCCCAACTTCAACTCTATTTCTGCAGTGTCTTTGGCAGCAGCCGTCATGTCTCTCTCTTACTCAACCATTGCTTGGGTGGCTTCCCTTAAGAAGGGCACTGTACCAAATGTGGACTATGGCCTGAAAGCCCACAGCACAGCAGATGGTGTGTTCAACTTCATGACTGCTTTGGGAGATGTAGCATTCTCTTATGCAGGTCACAATGTGGTTATGGAGATCCAAGCAACAATACCTTCTACACCTGAGAAGCCTTCCAAGAAAGCAATGTGGAAAGGAGTTATTGTTGCATACATAGGAGTTGGCTTTTGCTACTTTCCTGTGGCCTTCGTTGGATACTATGTATTTGGAAACTCTGTCGACGATAATATCCTCATCACGCTAGAGAAACCTGCTTGGCTTATTGCAGCAGCTAACATGTTTGTTATTGTCCATGTTATTGGAGGCTACCAGGTATTCTCAATGCCAGTGTTTGACATGATGGAAACCTTTTTGGTGAAGCGAATGAAATTTCCTCCTAGTTTTACACTGCGCTTTGTTGCTCGCACTATATTCGTAGTATTGACAATGCTAGTTGCCATATGCATCCCCTTCTTCGGTTCTCTTCTTGGATTTCTAGGAGGCTTTGCCTTTGCCCCAACATCTTACTTTCTACCCTGTATCATATGGCTTAGACTCCACAAACCAAAGAGATTTAACTTGTCTTGGATAGTGAATTGGACATGCATTGTGCTTGGGGTTCTACTGATGACACTAGCTCCAATTGGTTCATTAAGAAAAATCATTATTTCAGCAGAGCACTACAAGTTCTTTTCATGA 1302 0.4485 MTIDTADSNAINDWLPVTASRNAKWWYSAFHNLTAMVGAGVLTLPYAMSMMGWGPGTVILILSWIITLFTLWQMVEMHEMVPGVRFDRYHELGQQAFGEKLGLYIVVPQQLLVEVGTCIVYMVTGGTSLKKFHETVCPTCQKIRSAYWIVIFGSVNFLLSLCPNFNSISAVSLAAAVMSLSYSTIAWVASLKKGTVPNVDYGLKAHSTADGVFNFMTALGDVAFSYAGHNVVMEIQATIPSTPEKPSKKAMWKGVIVAYIGVGFCYFPVAFVGYYVFGNSVDDNILITLEKPAWLIAAANMFVIVHVIGGYQVFSMPVFDMMETFLVKRMKFPPSFTLRFVARTIFVVLTMLVAICIPFFGSLLGFLGGFAFAPTSYFLPCIIWLRLHKPKRFNLSWIVNWTCIVLGVLLMTLAPIGSLRKIIISAEHYKFFS* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu3g02600 433 PANTHER OS05G0424000 PROTEIN-RELATED 23 422 - -
Lapu3g02600 433 Pfam Transmembrane amino acid transporter protein 22 417 IPR013057 -
Lapu3g02600 433 Gene3D Amino acid/polyamine transporter I 18 426 - -
Lapu3g02600 433 FunFam Lysine histidine transporter 1 18 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu3g02600 Lapu-Chr3 48344710 48346909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu3g02600 3 433 Organic Solute Cotransporters AT1G24400 72.390 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu3g02600 K26385 - gmx:100809608 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02600 3 48344710 48346909 Lapu3g02600 3 48344710 48346909 ECH
Lapu6g00100 6 765342 768057 Lapu3g02600 3 48344710 48346909 PCT