Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g00126 ATGCGACGAATGTTGTCTCAGACACCCGGATCTACAGCATTCATGGCTTCTTCTGAGCACCCAAAAGTACAGATCAGAACCAGTGTGATCCAACGGAGTGATGAGTGCATTAATGATTTGGACTTGGGAAGGATGATGACGGGTTCTCTGGCTCGACCAAACTCCCTCTTTTTACGAACCGGTGGAACCCGGAAAGTAGGTAGTGAGATTGTGTCTTTTCAGAAGTTCTCATGGAATGGTTCATTTCCCTCTGAGCAGCTTGAACTTGAAGCAAAACAGAAGAACATGGAAGCACCTGTTGTGGTAGTCACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTAGGTAAAGCCAATTGCAAGGTCTTGGTCAACTATGCCAAGTCATCCACGCAAGCTGAGGAGGTTTCCAACTTGATTGAGGCGTTTGGTGGACAAGCTATTACCTTCGCGGGAGATGTTTCAAATGAAGCTGATGTGGAGTCTATGATTAAAACTGCAGTTGATGCTTGGGGAACTGTTGATGTATTGGTAAATAATGCAGGAATTACTCGAGATGGTTTGTTAATGAGAATGAAGAAATCACAGTGGCAGGACGTTATTGATCTGAATCTCACTGGTGTTTTTCTTTGCATGCAGGCAGCAGCAAAGATTATGACGATGAAAAAGAAGGGAAGGATAGTCAATATTGCATCAGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAATTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTCAATGCAGTAGCCCCTGGGTTTATTGCATCTGATATGACTGCCAAGCTACGACCAGACATTGAGAAAAAAAGATTGGAGTTAATCCCCTTAGGAAGATTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAATTCTTGGCTCTTAATCCTTCTGCTAATTACATCACTGGACAGGTGTTCACCATTGATGGAGGTTTGACAATTTCAGCTGAGCTTTTTTACAGGTTGCTTCTTGAGATGAATTTGGGATATTGTTGCATTTTGGTGACTCTATGGTACACTGTTCTAGTTGCTTATTCACTCCAACGGTTAAACATTGCCTTGGAAGCTTGA 1152 0.4392 MRRMLSQTPGSTAFMASSEHPKVQIRTSVIQRSDECINDLDLGRMMTGSLARPNSLFLRTGGTRKVGSEIVSFQKFSWNGSFPSEQLELEAKQKNMEAPVVVVTGASRGIGRAIALSLGKANCKVLVNYAKSSTQAEEVSNLIEAFGGQAITFAGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMKKSQWQDVIDLNLTGVFLCMQAAAKIMTMKKKGRIVNIASVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAKLRPDIEKKRLELIPLGRFGQPEEVAGLVEFLALNPSANYITGQVFTIDGGLTISAELFYRLLLEMNLGYCCILVTLWYTVLVAYSLQRLNIALEA 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g00126 383 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 101 339 IPR011284 GO:0004316|GO:0006633|GO:0051287
Spst3g00126 383 CDD BKR_SDR_c 100 340 - -
Spst3g00126 383 Pfam Enoyl-(Acyl carrier protein) reductase 105 340 - -
Spst3g00126 383 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 100 341 IPR036291 -
Spst3g00126 383 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 95 340 - -
Spst3g00126 383 Gene3D - 96 349 - -
Spst3g00126 383 PRINTS Glucose/ribitol dehydrogenase family signature 222 238 IPR002347 -
Spst3g00126 383 PRINTS Glucose/ribitol dehydrogenase family signature 100 117 IPR002347 -
Spst3g00126 383 PRINTS Glucose/ribitol dehydrogenase family signature 269 286 IPR002347 -
Spst3g00126 383 PRINTS Glucose/ribitol dehydrogenase family signature 302 322 IPR002347 -
Spst3g00126 383 PRINTS Glucose/ribitol dehydrogenase family signature 175 186 IPR002347 -
Spst3g00126 383 PRINTS Glucose/ribitol dehydrogenase family signature 248 267 IPR002347 -
Spst3g00126 383 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 99 279 - -
Spst3g00126 383 Coils Coil 374 383 - -
Spst3g00126 383 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 175 186 IPR002347 -
Spst3g00126 383 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 236 IPR002347 -
Spst3g00126 383 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 248 267 IPR002347 -
Spst3g00126 383 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 98 341 - -
Spst3g00126 383 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 235 263 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g00126 Spst-Chr3 2223520 2232029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g00126 84 341 Acyl Lipid Metabolism Gene Families AT1G24360 70.543 1.03e-129 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g00126 K00059 - gmx:100811718 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g00126 3 2223520 2232029 Spst3g00126 3 2223520 2232029 ECH
Spst1g01915 1 27399703 27402880 Spst3g00126 3 2223520 2232029 PCT