Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g02051 ATGATGATTATGGGTTCTCTGGCTCGACCAAACTCCCTCTTTTTCCGAACCAGTGGAAGGGGACTTACCCAGTTTGTGTGTTTTCAGAAGTTGACATGGAATGGTTCATTTCCCTCTGGGCAGCTTGAAGTTGATGCAAAGAAGAAGAACACAGAAGCACCTGTTGTTGTAGTTACTGGAGCCTCCAGAGGCATTGGCCGTGCAATTGCACTTTCCTTAGGTAAAGCCTCTTGCAAGGTCTTGGTTAACTATGCCAAGTCATCCACGCAAGCTGAGGAGGTTTCCAACTTGATTGAGGCATTTGGTGGACAAGCTCTTACCTTCGAGGGAGATGTTTCAAATGAGGCTGACGTGGAGTCTATGATTAAAACTGCAGTTGATGCATGGGGAACTGTTGATGTATTGGTAAATAATGCAGGAATTACACGAGATGGTTTGTTGATGAGAATGAATAAATCTCAGTGGCAGGACGTTATTGATCTGAATCTTACTGGTGTTTTTCTCTGCATTCAGGCAGCAGCAAAGATTATGACGATGAAAAAGAAGGGTAGGATAGTGAACATTACATCCGTTATTGGTCAGGTTGGCAATGTTGGACAAGCCAACTATAGTGCTGCAAAGGCAGGGGTAATTGGCCTCACAAAAAGTGCTGCCAGGGAATATGCTAGCAGAAACATCACTGTTAATGCAGTAGCCCCTGGGTTCATTGCATCTGATATGACTGCCATGCTACGACCAGACATTGAGAAAAAATTATTAGAGTTAATCCCCTTAGGAAGACTTGGCCAACCAGAAGAAGTTGCTGGACTTGTGGAGTTCTTGGCTCTTAATCCTTCTGCTAATTACATCACTGGACAGGTGTTCACCATTGATGGAGGTATGGCAATTCTAATGGTTGCCTTGGAAGCTCCTGGAATGAGGTTCGATTCAAAGTGTTTCTAG 942 0.4416 MMIMGSLARPNSLFFRTSGRGLTQFVCFQKLTWNGSFPSGQLEVDAKKKNTEAPVVVVTGASRGIGRAIALSLGKASCKVLVNYAKSSTQAEEVSNLIEAFGGQALTFEGDVSNEADVESMIKTAVDAWGTVDVLVNNAGITRDGLLMRMNKSQWQDVIDLNLTGVFLCIQAAAKIMTMKKKGRIVNITSVIGQVGNVGQANYSAAKAGVIGLTKSAAREYASRNITVNAVAPGFIASDMTAMLRPDIEKKLLELIPLGRLGQPEEVAGLVEFLALNPSANYITGQVFTIDGGMAILMVALEAPGMRFDSKCF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g02051 313 FunFam 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplastic 53 296 - -
Phco4g02051 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 55 296 IPR036291 -
Phco4g02051 313 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 190 218 IPR020904 GO:0016491
Phco4g02051 313 Pfam Enoyl-(Acyl carrier protein) reductase 60 294 - -
Phco4g02051 313 Gene3D - 53 296 - -
Phco4g02051 313 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 54 234 - -
Phco4g02051 313 CDD BKR_SDR_c 55 294 - -
Phco4g02051 313 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Phco4g02051 313 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Phco4g02051 313 PRINTS Glucose/ribitol dehydrogenase family signature 257 277 IPR002347 -
Phco4g02051 313 PRINTS Glucose/ribitol dehydrogenase family signature 177 193 IPR002347 -
Phco4g02051 313 PRINTS Glucose/ribitol dehydrogenase family signature 130 141 IPR002347 -
Phco4g02051 313 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Phco4g02051 313 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE 50 295 - -
Phco4g02051 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 141 IPR002347 -
Phco4g02051 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 191 IPR002347 -
Phco4g02051 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Phco4g02051 313 NCBIfam 3-oxoacyl-[acyl-carrier-protein] reductase 56 295 IPR011284 GO:0004316|GO:0006633|GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g02051 Phco-Chr4 40692771 40695684 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g02051 4 40692771 40695684 Phco4g02051 4 40692771 40695684 ECH
Phco2g02955 2 58452669 58455818 Phco4g02051 4 40692771 40695684 PCT