Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1968 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1969 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1970 Acco13g0957 Accr12g00919 . . . . . . Alju13g1198 . . . . . . . . . Dere14g0184 . Enph5g0769 Glsi13g0902 . . . . . . . . . . . . Lele17g0748 Lele18g0776 Lele19g0811 Lele20g0645 . . . . Mibi13g0927 . . . Prci9g1215 . . . . . . . Sto12g1148 . . Tsu03g02779 . . . . . .
Pvu9g1971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02302 . . Pste2g00371 . . . . . . . . . . . Vimu10g00994 . . Vra3g1112
Pvu9g1972 . . . . . . . . . . . . . . . . . . . . . . Gma15g01944 . . . . . . . . . . . . . . . . . . . . . . Phco7g02303 . . Pste2g00350 . . . . . . . . . . . Vimu10g00993 . . Vra3g1113
Pvu9g1973 . . . . . . . . . . . . . . . . . . . . . . Gma15g01945 . . . . . . . . . . . . . . . . . . . . . . Phco7g02304 . . Pste2g00347 . . . . . . . . . . . Vimu10g00990 . . Vra3g1114
Pvu9g1974 . . . Aed10g1356 . . . . . . . Apr1g2572 . . . . . . . . . . Gma15g01946 . . . . . . . . . . . . . . . . . . . . . . Phco7g02305 . . Pste2g00345 . . . . . . . . . . . Vimu10g00989 . . Vra1g1170
Pvu9g1975 . . . . . . . . . . . . . . . . . . . . . . Gma15g01947 . . . . . . . . . . . . . . . . . . . . . . Phco7g02306 . . Pste2g00343 . . . . . . . . . . . Vimu10g00988 . . Vra3g1116
Pvu9g1976 . . . . . Ahy20g2433 Ahy10g1954 . . . . Apr1g0974 . . . . Car01g01565 . . . . . . . . . . . . . . . Lapu9g00622 . . . . . Lja1g5476 . Mepo6g02284 Mesa5g02233 . Mtr2g2010 . Phco7g02307 . . Pste2g00463 . . . . . . . Trre11g02406 . . . Vimu10g00987 . . Vra3g1117
Pvu9g1977 . . . . . Ahy20g2436 Ahy10g1955 . . . . . . . . . Car05g00642 . . Dod09g0618 . . . . . . . Lal21g0822 . . . . . . . . . . . . Mepo5g02876 Mesa9g00758 . Mtr3g0617 . Phco7g02308 . . Pste2g00464 . . . . . . . Trre5g01771 Tsu03g00563 . . Vimu10g00986 . . Vra3g1118
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu9g1968 Chr9 28250629 28257896 -
Pvu Pvu9g1969 Chr9 28259768 28263279 -
Pvu Pvu9g1970 Chr9 28267316 28276260 +
Acco Acco13g0957 Chr13 7684384 7690591 -
Accr Accr12g00919 Chr12 9436011 9441943 -
Alju Alju13g1198 Chr13 30681118 30687101 +
Dere Dere14g0184 Chr14 1895277 1901702 +
Enph Enph5g0769 Chr5 6314287 6320847 -
Glsi Glsi13g0902 Chr13 27343347 27350019 +
Lele Lele17g0748 Chr17 19107575 19113726 +
Lele Lele18g0776 Chr18 4841479 4847546 -
Lele Lele19g0811 Chr19 4889511 4895681 -
Lele Lele20g0645 Chr20 13657030 13663162 +
Mibi Mibi13g0927 Chr13 11891654 11898153 -
Prci Prci9g1215 Chr9 26090109 26097253 +
Sto Sto12g1148 Chr12 7252618 7258926 -
Tsu Tsu03g02779 Chr03 37256792 37261019 -
Pvu Pvu9g1971 Chr9 28291843 28292268 +
Phco Phco7g02302 Chr7 40469672 40471872 +
Pste Pste2g00371 Chr2 3158906 3159414 +
Vimu Vimu10g00994 Chr10 9057779 9058180 -
Vra Vra3g1112 Chr3 11551411 11552309 +
Pvu Pvu9g1972 Chr9 28299129 28306646 +
Gma Gma15g01944 Chr15 28834449 28838732 +
Phco Phco7g02303 Chr7 40476184 40486969 +
Pste Pste2g00350 Chr2 2760767 2770551 -
Vimu Vimu10g00993 Chr10 9048631 9050314 -
Vra Vra3g1113 Chr3 11555639 11562772 +
Pvu Pvu9g1973 Chr9 28310649 28314834 -
Gma Gma15g01945 Chr15 28841186 28845338 -
Phco Phco7g02304 Chr7 40489730 40493283 -
Pste Pste2g00347 Chr2 2748427 2753680 +
Vimu Vimu10g00990 Chr10 9029428 9033049 +
Vra Vra3g1114 Chr3 11563078 11567331 -
Pvu Pvu9g1974 Chr9 28320943 28321767 +
Aed Aed10g1356 Chr10 17013854 17023465 -
Apr Apr1g2572 Chr1 35200006 35201902 +
Gma Gma15g01946 Chr15 28982733 28985653 +
Phco Phco7g02305 Chr7 40502109 40503210 +
Pste Pste2g00345 Chr2 2738585 2740814 -
Vimu Vimu10g00989 Chr10 9021539 9022725 -
Vra Vra1g1170 Chr1 15042494 15045546 -
Pvu Pvu9g1975 Chr9 28323057 28341623 -
Gma Gma15g01947 Chr15 29002319 29011483 -
Phco Phco7g02306 Chr7 40509424 40542638 -
Pste Pste2g00343 Chr2 2719508 2734841 +
Vimu Vimu10g00988 Chr10 8999257 9016395 +
Vra Vra3g1116 Chr3 11588170 11602560 -
Pvu Pvu9g1976 Chr9 28350566 28355955 -
Ahy Ahy20g2433 Chr20 129990555 129994492 -
Ahy Ahy10g1954 Chr10 105593894 105597883 -
Apr Apr1g0974 Chr1 14663208 14677095 +
Car Car01g01565 Chr01 32823047 32824922 +
Lapu Lapu9g00622 Chr9 7304124 7309848 +
Lja Lja1g5476 Chr1 93681492 93686342 -
Mepo Mepo6g02284 Chr6 30150099 30151720 +
Mesa Mesa5g02233 Chr5 36494999 36496078 -
Mtr Mtr2g2010 Chr2 29368195 29369747 +
Phco Phco7g02307 Chr7 40552926 40558417 -
Pste Pste2g00463 Chr2 4229082 4236347 -
Trre Trre11g02406 Chr11 28687559 28688632 +
Vimu Vimu10g00987 Chr10 8991338 8996396 +
Vra Vra3g1117 Chr3 11604537 11610433 -
Pvu Pvu9g1977 Chr9 28358258 28366268 +
Ahy Ahy20g2436 Chr20 130094853 130099630 +
Ahy Ahy10g1955 Chr10 105639156 105643927 +
Car Car05g00642 Chr05 35441712 35443018 +
Dod Dod09g0618 Chr09 10688069 10712802 -
Lal Lal21g0822 Chr21 7332514 7341590 -
Mepo Mepo5g02876 Chr5 34939749 34947211 -
Mesa Mesa9g00758 Chr9 16608675 16612155 -
Mtr Mtr3g0617 Chr3 8336298 8343048 +
Phco Phco7g02308 Chr7 40561069 40569374 +
Pste Pste2g00464 Chr2 4258579 4264959 +
Trre Trre5g01771 Chr5 13100603 13105444 +
Tsu Tsu03g00563 Chr03 4778771 4783599 +
Vimu Vimu10g00986 Chr10 8981864 8983541 -
Vra Vra3g1118 Chr3 11618312 11622659 +
Ahy Ahy10g1954 Chr10 105593894 105597883 -
Ahy Ahy20g2433 Chr20 129990555 129994492 -
Apr Apr1g2572 Chr1 35200006 35201902 +