Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1968 ATGGCCACCTTAGACGAACGCCCTTCTGCCAAAAGGTGGCTTCCTCTTGAAGCTAACCCTGACGTCATGAACCAGTTCCTTTGGGGTCTTGGGCTTCCAGTGGAGGAGGCAGAGTGCTGTGATGTTTTCGGCTTGGATGAGGAGCTTCTGGAAATAGTTCCAAAGCCAGTTCTCGCTGTGCTTTTTCTTTATCCCATTACTGCAAAGACTGAAGAAGAAAGGTTGCAACAGGAAAATGAAAAAAAAGATTATAGCAGTAAAGTGTACTTTATGAAGCAAACCGTGGGTAATGCTTGTGGTACGATAGGTCTGCTCCATGCACTTGGGAACATAACTTCCGAAGTCAAGCTTGTTGAGGGGTCATTTTTTGACAAGTTCTTTAAATCTACTGCCAGCATGGATCCAATTCAGCGGGCTGCCTTTCTTGAGAATGACAGGGACATGGAAGTTGCTCATTCAGTAGCAGCCACTGCTGGTGATACAGTGGCATCAGATAACGTGGACACTCATTTCATCTGCTTTGCCTGTGTGGATGGTCAACTGTATGAGCTTGATGGAAGAAAGTCGGGACCAATATCTCATGGTGAATCCTCACCAAGTGCTTTGTTGAGGGATGCAGCTAAAGTTATCCAGAGCATGATCCAGAAAAATCCAGATTCCCTTAACTTCAATGTCATTGCAATATCAAAGAAATCCGGGGATGGACATTAA 711 0.4501 MATLDERPSAKRWLPLEANPDVMNQFLWGLGLPVEEAECCDVFGLDEELLEIVPKPVLAVLFLYPITAKTEEERLQQENEKKDYSSKVYFMKQTVGNACGTIGLLHALGNITSEVKLVEGSFFDKFFKSTASMDPIQRAAFLENDRDMEVAHSVAATAGDTVASDNVDTHFICFACVDGQLYELDGRKSGPISHGESSPSALLRDAAKVIQSMIQKNPDSLNFNVIAISKKSGDGH* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1968 236 Coils Coil 67 87 - -
Pvu9g1968 236 CDD Peptidase_C12_UCH_L1_L3 13 228 - -
Pvu9g1968 236 Gene3D - 7 231 IPR036959 GO:0004843|GO:0006511
Pvu9g1968 236 SUPERFAMILY Cysteine proteinases 11 230 IPR038765 -
Pvu9g1968 236 Pfam Ubiquitin carboxyl-terminal hydrolase, family 1 13 214 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 15 32 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 53 65 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 93 110 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 165 176 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PRINTS Ubiquitin C-terminal hydrolase (C12) family signature 181 191 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 232 IPR001578 GO:0004843|GO:0006511
Pvu9g1968 236 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1968 Pvu-Chr9 28250629 28257896 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1968 K05609 - gmx:100527718 453.751