Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g1356 ATGACGGAAAAAAGTGGCGGCACCACCTCCGGCGGCAGGAACCCTAAGTCGTCTCAGAATTTGAAGGCCATTGTCACCGTGAAGCGAAGTGGTGGTGGGTTACTAACGAATCTAGTTAGGGATGGTGTTGAAGGGATTCAAGAGTTGGTTGGGAAAACTCTTGTTTTGGAGCTTGTGAGCAACGACCTTGATCCAAAAACAAACTTAGAGAGAAAGACAATAAAAGGTGATGCACACATGACTGATGGGGAAAAAGAGGATGATGAGGTGCAATATGAGGCCAAATTTGAGTTACCAGCAGAGTTTGGGAAAGTGGGTGCTGTTTTGGTTGAGAATGAACTCCACAATGAGATGTTTTTAAAGAGCATAGTCTTTGATGGATTCCCTGATGGCCCGCTCCACCTCACTTGTGATTCATGGGTTCAGCCCAATGTGAAGAGAGTCTTCTTCACCGATAAGTCATACTTGCCATCACAAACACCTAGTGGATTGAGAAAACTGAGGGAAGAGGAATTGAAGCAACTAAGAGGAAATGGAAAAGGAGAACCCACAGATTCTGACAGAATATATGATTATGATGTGTACAATGATCTTGGAGATCCTGATTCTAACCTTGAACTCAAAAGACCTGTTCTTGGTGGCTCCAAACAATATCCATATCCAAGACGGTGTCGTACTGGTCGAGAACATTCTGATACAGATCCATCAACTGAGAAGAGAAGTTCAAGTTTCTATGTTCCTCGCGATGAGACATTTTCTGAAACAAAACAGTCACAGTTCACAATGACCTCAATATCTTCAGGACTCAGTGCAATTTTGGAATCCTTAGATGCAATTCTCACTGACCAAAATCTTGGATTTAGAAGCTTCGAAGACATAGACACAATCTACAAAGAAGGGTTTCAGTTACCACCTCTTAAGGACAATGGCCTAAATTTCCTCCAAAAAATCATTCCTAGGTTGATCAATGCTGTTAATGATAGCCAGAACCTTTTACGATTTGATACACCAGAAACAGTTAAAAGGGACAAATTCTTTTGGTTCTCAGATGAGGAATTTGCTAGGGAGACTTTGGCTGGAGTGAACCCATATAGCATCCAATTGGTCAAGGAATGGCCTCTAAGGAGTAAACTAGAATCCCAAATCTATGGTCCACCAGAATCAGCTATTACCAGAGAAGTCATTGAGCCACAAATAATTGGTTTTGGCACAATTGAACAGGCCATTAAAGAGAAGAAGTTGTACATGTTAGACTATATGGATATATTGTTACCATATGTAAGCAAAGTGAGAGAGATTGAAGGAACCACATTATATGGATCAAGAACACTATTCTTCCTCACTAAACAAGGGACATTGAAGCCACTAGCTATTGAGCTCACTAGGCCACCTATGAATGGAAAGCCACAATGGAAGCAAGTCTTCACACCTTCTTCTCATTCAATTTCTCATTCAACCAATCTCTGGCTTTGGAGGCTTGCCAAAGCTCATGTTCTTGCTCATGATGCTGGTGTTCATGAACTTATAAATCATTGGCTAAGAACTCATGCTGTCATGGAACCCTTTGTCATTGCAACAAATAGGCAACTTAGTGCCATGCATCCAATATACAAATTACTGCATCCACATTTTAGATTCACTTTGGCTATCAATGCATTTGCTCGTGAAATTCTTATCAATGCAAATGGGATCATTGAAAAATCATTTTCACCTAATAAGTACTCAATGGAGTTAAGCTCTGTGGCATATGATCAACTTTGGCGATTTGATTTGCAAGCATTTCCTAATGATCTTATTGATAGAGGAATGGCCGTGGCAGATCTAAATGCACCACATGGCCTAAAGCTAACAATTGAAGACTACCCTTTTGCCAATGATGGTCTTCTCATATGGGATGCCATAAAAACCTGGGTCACTGACTATGTCAACCATTACTATCCAACCCCAAACATCATAGAATCCGACAAAGAGCTCCAAGCATGGTGGAAAGAAGTCGTAACAGTGGGCCATGGAGACAAATCCAAAGAGCCATGGTGGCCAAATCTCAAAACCCCAAAAGATCTCATTGAAATCATCGCCATCATAGCTTGGACAGCATCTGCACATCATGCAGCTGTGAACTTTGGCCAATACACTTATGGGGGCTACTTTCCTAACCGACCAAACATCGTGAGAAACAAAATGCCAACGGAAGACCAAACTGAGGAAGAGTGGGAGAATTTTCTGAACAAACCTGAGCAAACCCTTTTGGAGTCTTTCCCATCACAAATCCAAGCAACTACGATGATGGTGGTTTTCAACATACTATCATATCATTCTCCAGATGAAGAATATATTGGGCATTACTTGAAACCATTTTGGGGTGAGAATCCAACTGTGAAGGCAGCATTTGAAAGGTTCAATGGGAGACTGAAGGAAATTGAAGGTGTTATAGACTCAAGGAATGCCGATAGTAATCTGAAAAATAGACACGGTGTTGGGGTAGTGCCTTACGAGCTGATGAAGCCATTTTCAGGGCCTGGAATCACTGGAAAAGGAATTCCATATAGTGTATCCATTTAA 2562 0.4133 MTEKSGGTTSGGRNPKSSQNLKAIVTVKRSGGGLLTNLVRDGVEGIQELVGKTLVLELVSNDLDPKTNLERKTIKGDAHMTDGEKEDDEVQYEAKFELPAEFGKVGAVLVENELHNEMFLKSIVFDGFPDGPLHLTCDSWVQPNVKRVFFTDKSYLPSQTPSGLRKLREEELKQLRGNGKGEPTDSDRIYDYDVYNDLGDPDSNLELKRPVLGGSKQYPYPRRCRTGREHSDTDPSTEKRSSSFYVPRDETFSETKQSQFTMTSISSGLSAILESLDAILTDQNLGFRSFEDIDTIYKEGFQLPPLKDNGLNFLQKIIPRLINAVNDSQNLLRFDTPETVKRDKFFWFSDEEFARETLAGVNPYSIQLVKEWPLRSKLESQIYGPPESAITREVIEPQIIGFGTIEQAIKEKKLYMLDYMDILLPYVSKVREIEGTTLYGSRTLFFLTKQGTLKPLAIELTRPPMNGKPQWKQVFTPSSHSISHSTNLWLWRLAKAHVLAHDAGVHELINHWLRTHAVMEPFVIATNRQLSAMHPIYKLLHPHFRFTLAINAFAREILINANGIIEKSFSPNKYSMELSSVAYDQLWRFDLQAFPNDLIDRGMAVADLNAPHGLKLTIEDYPFANDGLLIWDAIKTWVTDYVNHYYPTPNIIESDKELQAWWKEVVTVGHGDKSKEPWWPNLKTPKDLIEIIAIIAWTASAHHAAVNFGQYTYGGYFPNRPNIVRNKMPTEDQTEEEWENFLNKPEQTLLESFPSQIQATTMMVVFNILSYHSPDEEYIGHYLKPFWGENPTVKAAFERFNGRLKEIEGVIDSRNADSNLKNRHGVGVVPYELMKPFSGPGITGKGIPYSVSI 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g1356 853 ProSitePatterns Lipoxygenases iron-binding region signature 1. 506 520 IPR020833 GO:0016702|GO:0046872
Aed10g1356 853 Gene3D - 174 273 - -
Aed10g1356 853 ProSitePatterns Lipoxygenases iron-binding region signature 2. 533 543 IPR020834 GO:0016702|GO:0046872
Aed10g1356 853 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 154 853 IPR013819 GO:0016702|GO:0046872
Aed10g1356 853 PRINTS Plant lipoxygenase signature 186 202 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 371 390 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 147 168 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 284 305 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 766 780 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 125 143 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 332 348 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 439 463 IPR001246 GO:0016491
Aed10g1356 853 PRINTS Plant lipoxygenase signature 219 238 IPR001246 GO:0016491
Aed10g1356 853 MobiDBLite consensus disorder prediction 205 250 - -
Aed10g1356 853 Gene3D - 365 502 - -
Aed10g1356 853 Pfam Lipoxygenase 163 836 IPR013819 GO:0016702|GO:0046872
Aed10g1356 853 PANTHER LIPOXYGENASE 17 852 IPR000907 GO:0016702|GO:0046872
Aed10g1356 853 ProSiteProfiles PLAT domain profile. 33 155 IPR001024 GO:0005515
Aed10g1356 853 SMART LH2_4 23 152 IPR001024 GO:0005515
Aed10g1356 853 CDD PLAT_LH2 21 152 IPR042057 -
Aed10g1356 853 PRINTS Lipoxygenase signature 526 546 IPR013819 GO:0016702|GO:0046872
Aed10g1356 853 PRINTS Lipoxygenase signature 506 523 IPR013819 GO:0016702|GO:0046872
Aed10g1356 853 PRINTS Lipoxygenase signature 488 505 IPR013819 GO:0016702|GO:0046872
Aed10g1356 853 PANTHER LIPOXYGENASE 17 852 - -
Aed10g1356 853 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 20 155 IPR036392 GO:0005515
Aed10g1356 853 Gene3D - 274 363 IPR027433 -
Aed10g1356 853 Gene3D PLAT/LH2 domain 22 173 - -
Aed10g1356 853 MobiDBLite consensus disorder prediction 1 21 - -
Aed10g1356 853 MobiDBLite consensus disorder prediction 222 237 - -
Aed10g1356 853 Gene3D - 503 851 - -
Aed10g1356 853 SUPERFAMILY Lipoxigenase 156 853 IPR036226 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g1356 Aed-Chr10 17013854 17023465 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g1356 98 853 Acyl Lipid Metabolism Gene Families AT3G45140 56.340 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g1356 K00454 - gmx:106794093 1517.67