LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod09g0618	ATGATGTCAGGCAATGACCCATTTGAGTTTTTCTTCAATTCGATTAGTGATGTGAAAGAAGCGTTTCTGCCATTGGAAGTGGGTATTAGGAATGCCGCCAAGGATCTTGAGCAATGCTGGGTTGGGACCAGGAACAAGGGAAACGGGGTTCAGTTGATTGCACAGGTGAATGAATGTGGCAAGTTTCAGATTTGCGGTATGAAGAACAAGAAGGGTGGCAATGAGAAAAGGAAAGCGTTGTCAACGAGGGTAAATGGGAAGGCTTTATTGGATATGTTTTCACAAGATTTGGGAAATGTGAACATGGGTGAAGTGTTGGGTACAGCGTTGAAGGAGAAGAAGGTGGTGGCTAAAGAAGATGGGTCTCTTCCAAATTGCTTGCAGTTTGCAGTTACTTCGCCTTCGCTGGTTAATGGGTTTCTTCAGCTTTTGCCGGCGCTACTCAAATCAGGGAGAAAGAGATTTTACAACATGGATGTCGAAGATCAATCTTGTTCTTGCATAAAGCTCAATGTTTTACGTGAAGTGAAGCAAAATGGATCTAAGGGTCAGTTTCTTAGAACTATCGGGGAAAAGGGGGTGAGGGAGACAGAGGGGAAACCTGTTTCATTAGAGTGCCTGATAGGTTTTATTGATCAGTTACCTCAAACTCTTCGGAGTCTCGATAAGGGAGTGCAAGAAAATGATAGTGATTTCGGGCGTATTTTTCTGCAGACGCCTTCTTCATCTTGGTTTAGTTTTATGAAAGCATTCACAGATGTTTCCGACTGGCCCAAAGTAGATGTGAATGGGTTCTTGAGGGATTTGAGATTTGCGAAGGTGGGTGGTGTGCCATCAGGTGTATTTGGACCAACCCCCTCAATAAAAGAAGATGGAGATGGTAGTGCCACTGTCAAAAGCAAGGAAGACACCGGGGACAGTTTCCCTCAGAGGCTTGCCGCTGACAAACACAGTGTTCCGCTGCCCAATGAGGAGCACACAAAGTCTAAGCTTTCGATTGTTTCGTTGACAGAATTGGTTGGGCTTCGGCTAGCGTCTAAACATCATCATGACAGGAAGAAACTAATCTCTGAACAACATTTCTTAGCATACACAGAAGAAACTGAAGGGACGAGGTTCTTTCAGGAGCTGGATAGAGATGAGAATGGTCCTAGGAGTATTTTGTCTAAAGCTGCTAGTGTAGTTGCTGTTCCACCACCAGTTGAAATTCCTGCTGGAAGTATTCTACGATCTGCATTGGCAGGTGGCCTTTCCTGTGCCTTTTCTTGTGCGTTAATGCATCCGGTTGATACAATCAAGACCCAAGTACAAGCATCAACCTTGTCCTTCACTGAAATCATTTCCATGGTTCCGCGGATTGGTGCAAAGGGTTTATACAGGGGATTAATCCCTGCAATTCTTGGACAGCTTGGAGGTCATGGCCTGCGAACTGGGATATTTGAAGCAAGTAAATCCATATTGCTAAATGTTGCACCAACACTTCTAGAAATGCAGGTAAGTTCTATATTATCATTCTGTAGCACAATTTTGGGAACAGCGATGCGGATCCCCAGTGAGGTGGTAAAGCAGCGGCTGCAGGCGGGACTTTATGACAATATGGGTGAGGCTTTGGTTGGGACTTGGCACCAAGATGGACTTCAGGGTTTCTTTCGTGGAACTGGGGCTACTCTTTGTCGTGAAGTTCCATTTTATGTTGCTGGCATGGGCCTATATGATGAATCTAAAAAGGCTGTTAAAAAACTACTAGGGCGGGAACTGGAGCCCTGGGAGGCAGTAGTTGTTGGAGCTATCTCTGGTGGCTTGGCTGGTGTCACCACAACGCCCTTTGATGTCATTAAAACTAGAATGATGACTACACAGGGTCAGTCTGTGTCAATGGCCGTAGTTGCCTTGTCTATATTACGCCAGGAAGGACCACTTGGCTTATTTAAAGGTGCAGTTCCCAGATTCTTCTGGATTGCCCCTCTAGGTGCCATAAACTTGGCAGGTTATGAGCTAGCAAGGAAGGCCTTAAATCATGTAGCGGGTGAGCAGCTGTCTCAGAAGAGGTGA	2052	0.4552	MMSGNDPFEFFFNSISDVKEAFLPLEVGIRNAAKDLEQCWVGTRNKGNGVQLIAQVNECGKFQICGMKNKKGGNEKRKALSTRVNGKALLDMFSQDLGNVNMGEVLGTALKEKKVVAKEDGSLPNCLQFAVTSPSLVNGFLQLLPALLKSGRKRFYNMDVEDQSCSCIKLNVLREVKQNGSKGQFLRTIGEKGVRETEGKPVSLECLIGFIDQLPQTLRSLDKGVQENDSDFGRIFLQTPSSSWFSFMKAFTDVSDWPKVDVNGFLRDLRFAKVGGVPSGVFGPTPSIKEDGDGSATVKSKEDTGDSFPQRLAADKHSVPLPNEEHTKSKLSIVSLTELVGLRLASKHHHDRKKLISEQHFLAYTEETEGTRFFQELDRDENGPRSILSKAASVVAVPPPVEIPAGSILRSALAGGLSCAFSCALMHPVDTIKTQVQASTLSFTEIISMVPRIGAKGLYRGLIPAILGQLGGHGLRTGIFEASKSILLNVAPTLLEMQVSSILSFCSTILGTAMRIPSEVVKQRLQAGLYDNMGEALVGTWHQDGLQGFFRGTGATLCREVPFYVAGMGLYDESKKAVKKLLGRELEPWEAVVVGAISGGLAGVTTTPFDVIKTRMMTTQGQSVSMAVVALSILRQEGPLGLFKGAVPRFFWIAPLGAINLAGYELARKALNHVAGEQLSQKR*	684

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod09g0618	683	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	495	577	IPR018108	-
	Dod09g0618	683	Coils	Coil	681	683	-	-
	Dod09g0618	683	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	406	486	IPR018108	-
	Dod09g0618	683	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	586	670	IPR018108	-
	Dod09g0618	683	SUPERFAMILY	Mitochondrial carrier	407	665	IPR023395	-
	Dod09g0618	683	Gene3D	Mitochondrial carrier domain	530	682	IPR023395	-
	Dod09g0618	683	Gene3D	Mitochondrial carrier domain	380	529	IPR023395	-
	Dod09g0618	683	PANTHER	S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN-LIKE	162	383	-	-
	Dod09g0618	683	PANTHER	S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN-LIKE	383	680	-	-
	Dod09g0618	683	PANTHER	S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN	162	383	-	-
	Dod09g0618	683	PANTHER	S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN	383	680	-	-
	Dod09g0618	683	MobiDBLite	consensus disorder prediction	282	309	-	-
	Dod09g0618	683	PRINTS	Mitochondrial carrier protein signature	424	438	IPR002067	GO:0055085
	Dod09g0618	683	PRINTS	Mitochondrial carrier protein signature	595	617	IPR002067	GO:0055085
	Dod09g0618	683	PRINTS	Mitochondrial carrier protein signature	411	424	IPR002067	GO:0055085
	Dod09g0618	683	MobiDBLite	consensus disorder prediction	294	309	-	-
	Dod09g0618	683	Pfam	Mitochondrial carrier protein	407	488	IPR018108	-
	Dod09g0618	683	Pfam	Mitochondrial carrier protein	586	672	IPR018108	-
	Dod09g0618	683	Pfam	Mitochondrial carrier protein	498	580	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod09g0618	Dod-Chr9	10688069	10712802	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod09g0618	356	683	EF-hand Containing Proteins	AT2G35800	64.706	1.10e-146	445

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod09g0618	-		-	aip:107623284	667.537