Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g02306 ATGGCTTACAAATCGTTGAGTTCTATCACTGTGTTGGATATTGAATCCCACGGAATTGCAAAAGAAGAAGCTACCACTCTCCACCAACGTCTCACAGAAATCATCAAAATTCACGGAGATGACACCCCTGCCACGTGGCAGCACATCAGCAGCAGCAGCTTCCTTAACCCTGAACTTCCCTTCTCCTTCCATCAGATGCTGTACTATGGTTGCTACAAGGATTTTGGTCCCGACCCACCTGCTTGGATACCCGACCCGAAAAGTGCTGCTTTGACAAATGTTTGGCAGTTGCTAGAGAGGAGGGGGGAAGAGTTTCTGGGTTCGGCATATAAGGATCCAATTACAAGCTTTGATGATTTCCAGAAGTTTTCAGTCTCAAATCCTGAGATATGTTGGAAAGCTGTTTTGGATGAAATGAACATATCATTTTCCAAGCCACCTGAATGCATCTTACGTGATAGTCCCCCAGGGGAAGACCCATTATCACACCCAGGTGGTCAATGGCTTCCTGGAGCATCCATTAATCCAGCACAGAATTGCATAAATATAAATGGCAAGAGAGGTTTGAATGATACAGTAATAATATGGCGTGAAGAACAACATGATGATCTCCCTCTACAAAGGATGACACTCAAGGAACTGCGTGAAGAAGTATGGTTAGTTGCATATGCTCTCAAATATCTGGATCTGGAGAAAGGATCTGCAATTGCGATTGATATGCCAATGAATGTCAAGTCTGTGGTTATCTACCTAGCTATTGTTCTTGCTGGTTATGTTGTTGTGTCGATTGCTGATAGTTTCGCTGCTAGTGAAATATCGAACAGGCTTAAAATATCAAAGGCAAAAGTCGTATTTACTCAGGATCTCATTAGGCGTGGCGACAAAAGTATACCCTTGTACAGTAGAGTTGTAGATGCAGATTCACCTATGGCAGTAGTTATCCCTACCAAAGGATCTGAATTTAGCATGAAACTGCGCGACAGTGATCTTTCTTGGCATGATTTTTTGGAGAAAGTCTATAGTCTCAAAGGCAAGGAATTCATAGAAACAGAACAACCAGTAGAAACATTTACAAACATTCTCTTTTCATCTGGAACAACAGGTGATCCAAAGGCAATTCCCTGGACCAATATTACTCCTCTAAAAGCTGCTGCAGATGCATGGTTCCACATGGATATTCGTAAAGGTGATGTGGTGTGCTGGCCCACTAATCTTGGATGGATGATGGGGCCATGGCTGGTATATGCATCCTTGCTAAATGGAGCTTCGATGGCTTTATATGTTGGATCCCCTCTTGGGTCTGGCTTTGCCAAGTTCGTACAAGATTCTAAAGTAACAATGCTTGGTGTTATTCCAAGTATTGTACGGAGTTGGAAAAGTGCAAATTCCACATCTGGATATGATTGGTCTTCTATTCGTTGCTTTGGCTCCTCTGGTGAAGCATCTAATGTAGATGAATACCTTTGGTTGATGGGAAGAGCTCTCTACAAGCCTGTCATTGAATATTGTGGTGGTACAGAAATTGGGGGTGGATTTGTGTGTGGATCACTACTACAAGCACAAGCATTAGCTGCTTTTAGTACGCCCGCTATTGGCTGTAGTTTGTATATTCTTGGTGATAATGGCCATCCTATAGGATACAATGGAGCGTTGACAAAAGCTCCTGATCTGGGAGACTCTGCTTCTGCAATCTTTTTAACAGCCTTCATTGCTGAAATTATTTTTCTGGACAGCCTTCATTGCTGCAATTACTTTTTCTGGGCAGCCTTAATTGCTGCAACTGTTTTTTCCTCTCTTTTCTCCATTGACCACCATTTTGCTCCATTGACCGTCACTACCGCCGACTGCTGCCGACCACCGTCCGCCGCCGACCACTGCCGTCCGCCACCGCCGTCTGCTGCCGCCGGCCGCCGGAAACTGCCGCCGGAATTTTTTCTGGCGAACTTTTTTTACTCTGGTGCTACTGATCATATGACACCTCATTCCTCTTATTTTTCATCCTACACTACTTTATCTAATAACCAATATATTACTGTTGCCAATGGTTCCAATACCCCTATTACTGGTCGTGGTAACATCCACCTTAAACCTTCATTTCCTTTAAAAAATGTGCTTCATGTTCCCAAACTATCCAATAACCTCTTGTCTATTAAAAAGGTTACTCAAGATTTAAATTGTGTTGTGGTATTTTTTCCTTCCCATTGTGTTTTTCAGGATCTTGCCACGGGGAAGACTCTTGGAATTGCTAAAGAACAGGACGGGTTATATTATTTACAGCTTGAAGAAAATAAAAAGTGTGCTAAACTACAGGCACACACTTCTAATCTTCATCAAGGTCCAGAACCTTGGTCATCCTCTCAGATATGGCTTCAACACAAACGTCTAGGTCATCCTCCATTCAGTACCCTAAAATCCTTATTTCCTGTTTTATTTACAAAAGTGTCTCCCGAGTCTTTCCATTGTGATGTTTGTCAATTTGCTAAACACCATCGAACAACTTTTCTTCCAAATGGTAATAAAAGTTCTAAACCTTTTGATCTTATTCATTCAGATGTATGGGGTCCTTCACCTATTCCTAATATCTCAGGTGCAAAATGGTTTGTTTCATTTATCGATGATTGTACTCGAGTTACCTGGATATTCCTCATGAAAGATAAGTCTGAAGTTTTTCACTTGTTTGTAAATTTTTACAAAATGGTTCAAACACAATTTGAAAGTTCAATTAAGAGATTGCGTTCTGATAATGGAAGAGAGTATGTGAACCAAAACCTTTCCAAATTCCTTCAAGAAAATGGAGTTGTTCATGAATTAACTTGTGTGAACACTCCTCAACAAAATGGGGTTGCTGAAAGAAAAAATCGTCATCTCCTTGAGGTTACTAGAGCTTTACTTTTCCAAATGTCTGTTCCTAAATCTTATTGGGGGGAAGCAGTCTTGACTGCCACTTATTTGATTAATAGATTACCCTCTCGGGTTTTAGAGGGTGTTACTCCTATTCAGCTTATGACCACATTTTATCCTTCTATTCCCATGTTGACTAGTCTTCAGAATCGTGTATTTGGTTGTCCTGTTTTTGTTCATGTTCATGGTCCTTATCGGGGTAAGTTAGATCCTCGCGCCATCAAATGTGTCTTCATCGGTTACGCCCCAAACAAGAAGGGGTACAAATGTTATCACCCTCAGAGTCGTAAAGTCTATGTTTCCAAGGATGTCGCATTTCATGAAACAGAGTCTTTCTTTCCTAGTTCTCAGCTTCAGGGGGAGAGTATTCAAGAAGCTGAGGTTCTTGAGTTGCCACCTTTTCCTTCGTTGCAGGATCTCATTCTTAGGGAGGATGACAAAGACCCTGCACCAACATCATTACCAGAAAATGAGGAGTTGCCACCTTTTCCTTCGTTGCAGGATCTCATTCTTAGGGAGGATGACAAAGACCCTGCACCAACATCATTACCAGAAAATGAGGACAAAAATAATGAGGACAAGTATTTTGGAAAACAATATCAGCGAAGGCAACAAAAACCCGTCCTGGTCGAACAACAACTCCAATTGTCTGAACCGGAGGTAAGAACTCATACCTGTGAAACTCTTGAGGACACCTTAAATACTGTTTTTGAACCTAACCTAAATGATTTACCTATTGCCTTGAGAAAAGAAAAAAGATCTTGTGTCAAATATCCTATATCCCAATTTGTGTCTACAAAAAGGCTTTCTATGCAGCACCGGAGTTTTCTTTCAGCTATTGATTCTATTAGAATCCCTACGTCAGTACAAGAAGCCTTGAAAGATGAGAATTGGATTCGAGCCATGAATGAAGAAATGAGTGCATTAGAAAAGAATAAGACTTGGGAGATTGTAGAGAAACCAAAAGATAAGAAGGCAGTGGGTTGTAGGTGGATATACACCGTTAAGTATAAGTCTGATGGCACACTGGATCGTTATAAAGCAAGGTTGGTTGCAAAAGGGTATACTCAAACCTATGGGATCGATTATGAGGAGACTTTTGCTCCCGTGGCAAAAATGAATACAGTCAGGATTATTCTCTCCCTGGCAGCACACTTTGGTTGGGCGATGCATCAATTTGATGTTAAAAATGCCTTCTTGCATGGAAGCTTGGAGGAAGAAGTATACATGGAGATTCCACCTGGTTATGATGCTAATAACGAAGGGAATAAGGTGTGCAGACTTAAGAAGGCCCTATATGGTCTTAAACAGTCACCTCGTGCTTGGTTTGGAAGGTTTACTCAAGCTATGGTATCTTTGGGGTATCGACAAAGCCAGGGTGACCATACTCTGTTTATAAAACATTCTCAGAATGGTAAACTTACTTTACTTTTGATCTATGTAGATGATATGATTATTACAGGTGATGATGAGATTGAAAAACAAACTTTGAGAGAGAGACTGGCTACTCAATTTGAGATGAAGGATCTCGGAAAACTGAAGTACTTCCTTGGGATAGAGGTTGCTTACTCTAGACAGGGCATCTTTATTTCTCAAAGAAAATACATCCTTGATCTCCTCAGAGAGACTGGTAAGTTGGGCTGCAAGACCACTGAAGTGCCAATAGAGCAAAATCATAGGATTGGGAATGATGAAGAAAATCCAAAGGTGGAGAAGACACAATATCAAAGACTTGTGGGAAAACTCATTTATCTATCACACACTAGGCCCGACATAGCTTATGCAGTTAGTGTGGTCAGCCAATTTATGCATGATCCAAGAGAAAGACACTTGCAGGCAGTAAATAGAATTATTCAGTACTTAAAAGCCTCTCCAGGAAAAGGATTGCTATTCAAAAAGGGGGAAAACTTATCCATGAAAATATATACTGATGCTGACTATGCAGGATCAATTGTTGATAGAAGGTCCACCACAGGCTATTGCATGTTCTTGGGTGGAAATTTGGTGACATGGAGGAGCAAGAAGCAAAATGTAGTTGCAAGATCAAGTGCAGAGGCAGAATTTAGAGCCATGGCTCAAGGGGTTTGTGAACTATTATGGATGAAGATCATACTTGATGACCTCAAAATAAAATATGAAGCTCCTATGGGTTTGGTGTGTGATAATAAGGCCGCCATCAGTATTGCACACAATCCAGTTCAACATGACCGAACAAAGCACATAGAGATAGACCGACATTTCATTAAGGAGAAGTTGGATAGTGGTCTTATAGCCACCGAGTACATTCCTTCAAGACTTCAATTGGCAGACATGTTTACTAAAGGACTTCCCACAAAACAGTTTGAAGATCTTACTTGCAAGGAAAACTTGTCTATGAAAGTATATACTGATGCTGACTATGCAGGATCAATTGTTGATAGGAGATTCACCACAGGCTATTGCATATTCTTGGGTGGAAATCTGGTGACATGGAGGAGCAAGAAACAAAATGTAGTTGCAAGATCAAGTGCAGAGGCAGAATTTAGAGTCATGGTTCAAGGGCAGAATAAATATCAGACATCTTCACCTCAGGGCCTCCGCCATCCTTTACCTATTCCTATGGCAGGTACAACAATCAAAATGGGTAATGCTTATCATCCAAAGTCCGATTGGCAAATTGAGTTACACCCAAAGCTGTTAGCACACTATTATGATCCTTATGTTGTCCTTAAACAAGTGGGGTCTGTGGCTAATGGGTTACAACTTCTCGAGGCTTCCCGTATACATCCAGTTTTCCATGCATCTCAATTGAAATTAGTAGTAGGAAGTCATCCAGTTGAGAAAGAACTGCCAAATGAACTACAGGGACAAGAAGGAGGTCTAGAAGCGGCTACATGGGAAGACATTTCTACCATACAAAACCAATTTACAAAATTCAACCTTGAGGACAAGGTTGTTAAAGCAGTGGCGGGTAATGTTCGGAAGGGAAGTAATGAGAGGGGTTGGAAACCACAAAATGTCCCGGGAATAGGCGAGCTGGCTCTTGGTTCCCTCATGCTTGGGGCATCAAATACACTGCTGAATGCTGACCATTATGGTGTCTATTTCAAAGGAATGCCTCTATTGAATGGAAAGGTTTTACGGAGGCATGGGGATGTATTTGAGCGTACTGCTAGAGGATACTATCATGCACATGGTCGTGCAGATGACACAATGAACCTTGGGGGAATCAAGGTGAGTTCGGTTGAGATTGAACGCATATGCAATGAAGTAGATAGCAGTATTCTGGAAACAGCTGCAATAGGAGTACCACCTTCTGGTGGTGGACCTGAGTTGTTGAATATAGTAGTAGTATTCAAGGATGCAAATTCCAAGCAAGATTTACACCAATTGAGGATGTCTTTTAATTCAGCTCTCCAAAAGAAACTAAATCCACTGTTTCGGGTTTCTCAAGTAGTACCACAGTCATCTCTTCCAAGGACGGCATCCAACAAGGTTATGAGAAGGGTTTTGCGTCAGCAGCTTACAGAAACTAACCAAAGTTCTAAAATATAA 6435 0.4129 MAYKSLSSITVLDIESHGIAKEEATTLHQRLTEIIKIHGDDTPATWQHISSSSFLNPELPFSFHQMLYYGCYKDFGPDPPAWIPDPKSAALTNVWQLLERRGEEFLGSAYKDPITSFDDFQKFSVSNPEICWKAVLDEMNISFSKPPECILRDSPPGEDPLSHPGGQWLPGASINPAQNCININGKRGLNDTVIIWREEQHDDLPLQRMTLKELREEVWLVAYALKYLDLEKGSAIAIDMPMNVKSVVIYLAIVLAGYVVVSIADSFAASEISNRLKISKAKVVFTQDLIRRGDKSIPLYSRVVDADSPMAVVIPTKGSEFSMKLRDSDLSWHDFLEKVYSLKGKEFIETEQPVETFTNILFSSGTTGDPKAIPWTNITPLKAAADAWFHMDIRKGDVVCWPTNLGWMMGPWLVYASLLNGASMALYVGSPLGSGFAKFVQDSKVTMLGVIPSIVRSWKSANSTSGYDWSSIRCFGSSGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFVCGSLLQAQALAAFSTPAIGCSLYILGDNGHPIGYNGALTKAPDLGDSASAIFLTAFIAEIIFLDSLHCCNYFFWAALIAATVFSSLFSIDHHFAPLTVTTADCCRPPSAADHCRPPPPSAAAGRRKLPPEFFLANFFYSGATDHMTPHSSYFSSYTTLSNNQYITVANGSNTPITGRGNIHLKPSFPLKNVLHVPKLSNNLLSIKKVTQDLNCVVVFFPSHCVFQDLATGKTLGIAKEQDGLYYLQLEENKKCAKLQAHTSNLHQGPEPWSSSQIWLQHKRLGHPPFSTLKSLFPVLFTKVSPESFHCDVCQFAKHHRTTFLPNGNKSSKPFDLIHSDVWGPSPIPNISGAKWFVSFIDDCTRVTWIFLMKDKSEVFHLFVNFYKMVQTQFESSIKRLRSDNGREYVNQNLSKFLQENGVVHELTCVNTPQQNGVAERKNRHLLEVTRALLFQMSVPKSYWGEAVLTATYLINRLPSRVLEGVTPIQLMTTFYPSIPMLTSLQNRVFGCPVFVHVHGPYRGKLDPRAIKCVFIGYAPNKKGYKCYHPQSRKVYVSKDVAFHETESFFPSSQLQGESIQEAEVLELPPFPSLQDLILREDDKDPAPTSLPENEELPPFPSLQDLILREDDKDPAPTSLPENEDKNNEDKYFGKQYQRRQQKPVLVEQQLQLSEPEVRTHTCETLEDTLNTVFEPNLNDLPIALRKEKRSCVKYPISQFVSTKRLSMQHRSFLSAIDSIRIPTSVQEALKDENWIRAMNEEMSALEKNKTWEIVEKPKDKKAVGCRWIYTVKYKSDGTLDRYKARLVAKGYTQTYGIDYEETFAPVAKMNTVRIILSLAAHFGWAMHQFDVKNAFLHGSLEEEVYMEIPPGYDANNEGNKVCRLKKALYGLKQSPRAWFGRFTQAMVSLGYRQSQGDHTLFIKHSQNGKLTLLLIYVDDMIITGDDEIEKQTLRERLATQFEMKDLGKLKYFLGIEVAYSRQGIFISQRKYILDLLRETGKLGCKTTEVPIEQNHRIGNDEENPKVEKTQYQRLVGKLIYLSHTRPDIAYAVSVVSQFMHDPRERHLQAVNRIIQYLKASPGKGLLFKKGENLSMKIYTDADYAGSIVDRRSTTGYCMFLGGNLVTWRSKKQNVVARSSAEAEFRAMAQGVCELLWMKIILDDLKIKYEAPMGLVCDNKAAISIAHNPVQHDRTKHIEIDRHFIKEKLDSGLIATEYIPSRLQLADMFTKGLPTKQFEDLTCKENLSMKVYTDADYAGSIVDRRFTTGYCIFLGGNLVTWRSKKQNVVARSSAEAEFRVMVQGQNKYQTSSPQGLRHPLPIPMAGTTIKMGNAYHPKSDWQIELHPKLLAHYYDPYVVLKQVGSVANGLQLLEASRIHPVFHASQLKLVVGSHPVEKELPNELQGQEGGLEAATWEDISTIQNQFTKFNLEDKVVKAVAGNVRKGSNERGWKPQNVPGIGELALGSLMLGASNTLLNADHYGVYFKGMPLLNGKVLRRHGDVFERTARGYYHAHGRADDTMNLGGIKVSSVEIERICNEVDSSILETAAIGVPPSGGGPELLNIVVVFKDANSKQDLHQLRMSFNSALQKKLNPLFRVSQVVPQSSLPRTASNKVMRRVLRQQLTETNQSSKI 2144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g02306 2144 CDD RNase_HI_RT_Ty1 1760 1811 - -
Phco7g02306 2144 PANTHER ACYL-ACTIVATING ENZYME 17, PEROXISOMAL-RELATED 2 546 - -
Phco7g02306 2144 ProSitePatterns Putative AMP-binding domain signature. 360 371 IPR020845 -
Phco7g02306 2144 MobiDBLite consensus disorder prediction 1112 1131 - -
Phco7g02306 2144 SUPERFAMILY Ribonuclease H-like 843 1012 IPR012337 -
Phco7g02306 2144 SUPERFAMILY DNA/RNA polymerases 1278 1710 IPR043502 -
Phco7g02306 2144 Gene3D - 2030 2144 IPR045851 -
Phco7g02306 2144 SUPERFAMILY Acetyl-CoA synthetase-like 119 547 - -
Phco7g02306 2144 CDD RNase_HI_RT_Ty1 1609 1746 - -
Phco7g02306 2144 Pfam AMP-binding enzyme 206 546 IPR000873 -
Phco7g02306 2144 SUPERFAMILY Acetyl-CoA synthetase-like 1964 2137 - -
Phco7g02306 2144 Pfam GAG-pre-integrase domain 754 829 IPR025724 -
Phco7g02306 2144 ProSiteProfiles Integrase catalytic domain profile. 840 1006 IPR001584 GO:0015074
Phco7g02306 2144 MobiDBLite consensus disorder prediction 1141 1160 - -
Phco7g02306 2144 Gene3D - 104 555 IPR042099 -
Phco7g02306 2144 Gene3D - 836 1020 IPR036397 GO:0003676
Phco7g02306 2144 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1279 1522 IPR013103 -
Phco7g02306 2144 Pfam Integrase core domain 843 943 IPR001584 GO:0015074
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g02306 Phco-Chr7 40509424 40542638 Dispersed