LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g0748	ATGGCGGGAAACGACTGGATAAACAGCTACTTGGAGGCGATCCTGGATGTCGGGCCTGGTCTCGATGATGCCAAGTCCTCTCTTCTTCTCAGAGAGAGAGGTAGATTCAGTCCCACTCGCTACTTCGTTGCCGAGGTCATCTCTGGTTTCGATGAGACTGATCTCTACCGCTCTTGGGTTCGGGCTTCTGCAACGAGGAGTCCCCAGGAGAGGAATACTAGATTGGAGAATATGTGTTGGAGGATTTGGAACTTGTCTCGTCAAAAGAAGCAGCTTGAGAATGAGGCAGCACAAAGATTGAATAAACGTCATCTTGAACGTGAAAGAGGCCGCAGAGAAGCAACTGCTGATATGTCAGAGGACTTATCAGAGGGAGAAAAAGGAGATCCAGTTAGTGAGGTTTCAGCTCATGGCGATAGCACAAGAGGAAGACTTCCTAGGATCAGTTCTGCTGATGCTATGGAGATATGGGCTAACAGTCAAAAGGGGAAGAAACTCTATATTGTACTCATAAGCATTCATGGTCTAATAAGAGGCGAGAACATGGAGCTGGGACGGGATTCCGATACTGGCGGTCAGGTTAAGTATGTTGTGGAGCTTGCAAGGGCCTTGGGTTCAATGCCAGGAGTTTATAGAGTTGATTTGCTAACTAGACAAGTATCATCACCAGATGTAGATTGGAGTTATGGGGAGCCAATAGAAATGTTGACTCCAAGGAACCAAGATGATTTAACAGATGATATGGGAGAGAGCAGTGGTGCTTATATAATTCGTATACCCTTCGGTCCAAGAGATAAATATATTCCCAAAGAACATCTCTGGCCTTACATTTCTGAATTTGTTGATGGTGCTCTTGGCCACATCATACAGATGTCAAAAGCTCTTGGGGAGCAAATTGGTGGTGGGCACGCTGTCTGGCCTGTTGCCATTCATGGACATTATGCAGATGCTGGGGACTCTGCTGCTCTTCTATCTGGTGCTTTAAATGTTCCAATGCTTTTCACTGGCCACTCACTTGGTAGGGATAAGTTAGAACAGCTTCTGCAGCAAGCTCGACTATCAAGGGATGAAATAAATACAACATACAAGATTATGCGTCGAATAGAAGCTGAGGAATTAGCCCTTGATGCTTCTGAAATAGTCATAACAAGCACTAGACAGGAAATAGAACAACAATGGCGTTTGTATGATGGCTTTGATCCGGTATTGGAGCGCAAAATACGAGCAAGGATCAGACGTAATGTGAGTTGTTATGGTAGATTCATGCCTCGTATGGCGATAATTCCACCCGGTATGGAGTTCCATCACATAATTCCACAAGAGGGTGATATAGAAAGTGAACCAGACGGAAATTTGGATCATCCTGCCCCCCAAGATCCACCTATTTGGTCTGAGATAATGCGGTTCTTTACCAACCCTCGCAAGCCGATGATCCTTGCCCTTGCTAGACCAGACCCCAAAAAGAACATCACAACTTTGGTAAAAGCATTTGGAGAATGCCGTCCCCTACGAGAACTTGCAAATCTAACATTAATTATGGGTAACAGAGATGGCATCGATGAAATGTCAAGCACAAATGCCTCTGTTCTTCTCTCAGTACTTAAGCTGATTGACAAGTATGATTTGTACGGGCAAGTGGCATATCCAAAACACCACAAACAATATGAAGTTCCTGACATATATTGTCTAGCTGCAAAGACAAAGGGTGTTTTTATCAATCCAGCTTTTATTGAGCCATTTGGTCTTACCTTAATTGAGGCAGCTGCTCATGGTTTGCCAATTGTTGCAACAAAAAATGGAGGTCCTGTTGATATTCATAGGGTACTTGACAATGGTCTACTTGTGGATCCCCATGACCAGCAGTCTATTTCAGATGCTCTTTTGAAGCTTGTTAGCAACAAGCAATTATGGGCAAAATGTAGACATAATGGGTTGAAGAATATCCATCTATTTTCGTGGCCTGAGCATTGCAAGACTTACCTGTCTAAAATAGCCACTTGTAAACCAAGATATCCACAGTGGCTGCGAAATGATGATGGTGCTGAAAGTTCTGAATCAGAATCACCTAGTGATTCCTTGAGAGATATACATGATTTATCTCTAAACCTGAAGTTTCCACTGGATGGAGAGAAGAGTGGGGAAAGTGGAAATGATAATTCCATGGAGTCTGAAGCAAATACAGCTGATAGAAAAAATAAATTGGAGAATGCTGTGTTGTCATGGTCAAAGGGCATCTCCAAGGACACACGCAAGGGTGGAGCTACAGAAAAATCAGATCAAAATACAAATGCTGGTAAATTTCCACCACTGAGGAGGAGAAAACATCTCTTTGTCATTTCAGTGGACTGTGATACTACTCAAGGCCTTCTTGAAACCATTAAAGTGATATTTGAGTCCGCAGAAAAGGAGAGGGCTGAAGGCTCTGTCGGATTCATTTTGTCAACATCCTTAACAATATCTGAGATACACTCATTCCTGGTCTCGAGTGGCTTGAGCCCTAGTGATTTTGATGCTTATATTTGCAACAGTGGCAGTGATCTTTACTACCCATCCCTCATGTCGGAAGATCGTTCCTTTGTGGTTGACTTGTATTATCACTCACACATAGAATACCGTTGGGGTGGCGAAGGGCTGAGGAAGACTTTGGTACGTTGGGCCGCATCAATCACTGAAGGATTCGGGATCACTGATAAGAAGGATGAGATTGAGGAGCAAATTGTGACTCCTTCTGAACAGCTTTCTACTGACTACTGTTATGCTTTTAAGCTGCAAAAGCCGGGAAAGGCTCCTCCTGTTAAGGAACTTCGGAAGCTTCTGAGAATCCAGGCTCTACGTTGTCATGTTATTTATTGTCAAAATGGAACAAGAATGAACGTAATTCCAGTGTTGGCATCTCGTTCCCAAGCCCTCAGGTACCTCTATGTTCGATGGGGTTTTGGACTGTCGAAGATGGTTGTGTTTGTGGGAGAATGTGGCGAGACTGATTATGAAGGATTGCTTGGTGGTCAACACAAGAGTGTTATACTGAAGGGAGTTGGAAGTAGTGCAATCAGCCAACTCCATTGCAATAGAAACTATCCTCTATCAGATGTCATTGCACTAGACGGCCCCAACATTGCCGAGGCTAGTGACAGTAGCAGCGGTGCCGATATCCGATCCCTGATAGAAAAAGTAGGATTTCTCAAGGACTGA	3192	0.4392	MAGNDWINSYLEAILDVGPGLDDAKSSLLLRERGRFSPTRYFVAEVISGFDETDLYRSWVRASATRSPQERNTRLENMCWRIWNLSRQKKQLENEAAQRLNKRHLERERGRREATADMSEDLSEGEKGDPVSEVSAHGDSTRGRLPRISSADAMEIWANSQKGKKLYIVLISIHGLIRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPIEMLTPRNQDDLTDDMGESSGAYIIRIPFGPRDKYIPKEHLWPYISEFVDGALGHIIQMSKALGEQIGGGHAVWPVAIHGHYADAGDSAALLSGALNVPMLFTGHSLGRDKLEQLLQQARLSRDEINTTYKIMRRIEAEELALDASEIVITSTRQEIEQQWRLYDGFDPVLERKIRARIRRNVSCYGRFMPRMAIIPPGMEFHHIIPQEGDIESEPDGNLDHPAPQDPPIWSEIMRFFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTLIMGNRDGIDEMSSTNASVLLSVLKLIDKYDLYGQVAYPKHHKQYEVPDIYCLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPIVATKNGGPVDIHRVLDNGLLVDPHDQQSISDALLKLVSNKQLWAKCRHNGLKNIHLFSWPEHCKTYLSKIATCKPRYPQWLRNDDGAESSESESPSDSLRDIHDLSLNLKFPLDGEKSGESGNDNSMESEANTADRKNKLENAVLSWSKGISKDTRKGGATEKSDQNTNAGKFPPLRRRKHLFVISVDCDTTQGLLETIKVIFESAEKERAEGSVGFILSTSLTISEIHSFLVSSGLSPSDFDAYICNSGSDLYYPSLMSEDRSFVVDLYYHSHIEYRWGGEGLRKTLVRWAASITEGFGITDKKDEIEEQIVTPSEQLSTDYCYAFKLQKPGKAPPVKELRKLLRIQALRCHVIYCQNGTRMNVIPVLASRSQALRYLYVRWGFGLSKMVVFVGECGETDYEGLLGGQHKSVILKGVGSSAISQLHCNRNYPLSDVIALDGPNIAEASDSSSGADIRSLIEKVGFLKD	1063

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele17g0748	1063	MobiDBLite	consensus disorder prediction	94	133	-	-
	Lele17g0748	1063	Pfam	Glycosyl transferases group 1	471	644	IPR001296	GO:0016757
	Lele17g0748	1063	SUPERFAMILY	UDP-Glycosyltransferase/glycogen phosphorylase	182	662	-	-
	Lele17g0748	1063	Coils	Coil	341	361	-	-
	Lele17g0748	1063	Coils	Coil	75	107	-	-
	Lele17g0748	1063	PANTHER	SUCROSE-PHOSPHATE SYNTHASE 3-RELATED	1	1058	-	-
	Lele17g0748	1063	Pfam	Sucrose-6F-phosphate phosphohydrolase	791	1009	IPR006380	-
	Lele17g0748	1063	MobiDBLite	consensus disorder prediction	746	768	-	-
	Lele17g0748	1063	CDD	GT4_sucrose_synthase	167	662	-	-
	Lele17g0748	1063	MobiDBLite	consensus disorder prediction	707	729	-	-
	Lele17g0748	1063	CDD	HAD_SPS	776	1012	IPR035659	-
	Lele17g0748	1063	Gene3D	Glycogen Phosphorylase B;	168	664	-	-
	Lele17g0748	1063	Pfam	Sucrose synthase	168	392	IPR000368	GO:0005985\|GO:0016157
	Lele17g0748	1063	TIGRFAM	sucrsPsyn_pln: sucrose phosphate synthase	1	1058	IPR012819	GO:0005985\|GO:0046524
	Lele17g0748	1063	FunFam	Sucrose-phosphate synthase 1	432	652	-	-
	Lele17g0748	1063	Gene3D	Glycogen Phosphorylase B;	432	652	-	-
	Lele17g0748	1063	MobiDBLite	consensus disorder prediction	94	145	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g0748	Lele-ChrLele17	19107575	19113726	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g0748	1	1050	Glycosyltransferase	AT5G20280	76.046	0.0	1637

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele17g0748	17	19107575	19113726	Lele19g0811	19	4889511	4895681	hybridization
	Lele17g0748	17	19107575	19113726	Lele20g0645	20	13657030	13663162	hybridization