Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra3g1118 ATGGCGGTTCAGAGGATCACTTCCAACGAAGCACAAGCTTCGAAGAAGGTTTCGCATGACCATTTCTTTTTATGGAGAGAGTTTGTGTGGGGAGCTGTTGCTGGTGCCTTTGGAGAAGGAATGATGCATCCAGTGGATACCATTAAAACCCGACTACAAAGTCAAGCTATTCTAAATGGACTTCAGAACCAGAAAAACATATTGCAGATGGTGCGATATGTCTGGCAGGTTGATGGACTAAAAGGCTTTTACAGGGGTGCAATACCTGGTATTACTGGATCTCTTGCGACTGGTGCAACATATTTTGGTGTCATAGAGTCCACAAAAAAGTGGATTGAGGATTCACATCCTAGTCTTAGGGGCCACTGGGCGAATTTCATTGCTGGAGCTGTTGGAGACACTCTAGGTTCCTTTGTGTATGTTCCATGTGAAGTGATAAAACAACGGATGCAGGTTCAAGGCACAGTTACGTCTTGGAGTTCGGTTGCTGTGAAAAATGGCAACGCAATTAAGCCTGGCGCACAGATATATGGTTATTATACAGGGATGATCCATGCAGGCTTCTCAATATGGAAAACACAGGGCTTAAAAGGTTTATATGCAGGATATTTATCTACGCTGGCAAGGGATGTTCCGTTTGCTGGCCTAATGGTCATGTTCTATGAAGGTTTGAAAGACGTTAAAGAATATGTAGAGCAAAGAGGGATGTCTAGCCCAAATTTGCGTGTTAACCATTCATTCGAGGGACTGGTTTTAGGAGGATTAGCGGGTGGTCTCAGCGCATATCTTACTACTCCTTTGGACGTTGTGAAAACAAGACTGCAAGTGCAAGGTTCAACTTTGAGGTATACTGGTTGGTTGGATGCAATTTGCAGTATATGGGCCGCAGAAGGCATGAAGGGAATTTTTAGGGGTGGTATCCCCAGGATTGCGTGGTACATTCCGGCTTCAGCACTAACATTCATGGCTGTGGAATTTCTCAGAGATCATTTTAATGAAAGAGTGCCCAATGATAACTCACGAGATGTTAGCAGATTATCAGTAGACAAGAAATCACTGCAGGAGGTTGCTTAG 1074 0.4404 MAVQRITSNEAQASKKVSHDHFFLWREFVWGAVAGAFGEGMMHPVDTIKTRLQSQAILNGLQNQKNILQMVRYVWQVDGLKGFYRGAIPGITGSLATGATYFGVIESTKKWIEDSHPSLRGHWANFIAGAVGDTLGSFVYVPCEVIKQRMQVQGTVTSWSSVAVKNGNAIKPGAQIYGYYTGMIHAGFSIWKTQGLKGLYAGYLSTLARDVPFAGLMVMFYEGLKDVKEYVEQRGMSSPNLRVNHSFEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYTGWLDAICSIWAAEGMKGIFRGGIPRIAWYIPASALTFMAVEFLRDHFNERVPNDNSRDVSRLSVDKKSLQEVA* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra3g1118 357 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 352 - -
Vra3g1118 357 Gene3D Mitochondrial carrier domain 2 169 IPR023395 -
Vra3g1118 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Vra3g1118 357 SUPERFAMILY Mitochondrial carrier 21 327 IPR023395 -
Vra3g1118 357 Gene3D Mitochondrial carrier domain 170 348 IPR023395 -
Vra3g1118 357 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 352 - -
Vra3g1118 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Vra3g1118 357 Pfam Mitochondrial carrier protein 247 333 IPR018108 -
Vra3g1118 357 Pfam Mitochondrial carrier protein 122 227 IPR018108 -
Vra3g1118 357 Pfam Mitochondrial carrier protein 24 114 IPR018108 -
Vra3g1118 357 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra3g1118 Vra-Chr3 11618312 11622659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra3g1118 31 328 EF-hand Containing Proteins AT2G35800 29.097 6.17e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra3g1118 - - gmx:100790921 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra3g1118 3 11618312 11622659 Vra3g1118 3 11618312 11622659 ECH