Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g1598 . . Adu08g02584 . . Ahy18g2759 Ahy8g2495 Aip08g03139 . . . . Arst8g03566 . . . . . . Dod09g0839 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01770 . . . . . . Spst9g01885 . . . . . . . Vimu10g01817 . . .
Pvu9g1599 . . Adu08g02583 . . Ahy18g2757 Ahy8g2494 Aip08g03138 . . . . Arst8g03565 . . . . . . Dod09g0840 . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g01771 . Psa5g1396 . . . . Spst9g01884 . . . . . . . Vimu10g01824 . . .
Pvu9g1600 . . Adu08g02582 . . Ahy18g2756 Ahy8g2493 Aip08g03137 . . . . Arst8g03564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01882 . . . . . . . Vimu10g01826 . . .
Pvu9g1601 . . . . . . . . . Amo08g2160 . . . . . . . . . Dod09g0841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01880 . . . . . . . Vimu10g01827 . . .
Pvu9g1602 . . Adu08g02581 . . Ahy18g2755 Ahy8g2492 Aip08g03136 . Amo08g2159 . . . . . . . . . Dod09g0842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g1603 . . . . . . . . . . . . . . . . . . . Dod09g0843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01876 . . . . . . . Vimu10g01831 . . .
Pvu9g1604 . . Adu08g02578 . . Ahy18g2753 Ahy8g2489 Aip08g03133 . Amo08g2155 . . Arst8g03560 . . . . . . Dod09g0846 . . . . . . . Lal21g0668 . . . Lan3g0713 . . . . . . . . . . . . . . . . . . . . Spst9g01875 . . . . . . . Vimu10g01832 . . .
Pvu9g1605 . . Adu08g02577 . . Ahy18g2752 Ahy8g2488 Aip08g03132 . . . . Arst8g03559 . . . . . . Dod09g0848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01874 . . . . . . . Vimu10g01834 . . .
Pvu9g1606 . . . . . . . . . . . . . . . . . . . Dod09g0849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g01835 . . .
Pvu9g1607 . . . . . . . . . . . . . . . . . . . Dod09g0850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst9g01870 . . . . . . . . . . .
   
Previous Page 2291 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Amo Amo08g2155 Chr08 34471820 34485088 -
Pvu Pvu9g1598 Chr9 22437826 22440949 -
Adu Adu08g02584 Chr08 41937892 41944896 +
Ahy Ahy18g2759 Chr18 131256181 131259933 +
Ahy Ahy8g2495 Chr8 47757993 47761764 +
Aip Aip08g03139 Chr08 121638252 121641946 +
Arst Arst8g03566 Chr8 46310476 46314238 +
Dod Dod09g0839 Chr09 26605091 26616768 -
Phco Phco7g01770 Chr7 18037097 18040150 -
Spst Spst9g01885 Chr9 25137373 25140417 +
Vimu Vimu10g01817 Chr10 25743478 25746646 -
Pvu Pvu9g1599 Chr9 22457160 22460825 -
Adu Adu08g02583 Chr08 41931311 41935300 +
Ahy Ahy18g2757 Chr18 131238822 131242987 +
Ahy Ahy8g2494 Chr8 47751363 47755511 +
Aip Aip08g03138 Chr08 121621064 121625034 +
Arst Arst8g03565 Chr8 46303892 46307872 +
Dod Dod09g0840 Chr09 26641070 26645385 -
Phco Phco7g01771 Chr7 18051904 18054740 -
Psa Psa5g1396 Chr5 108303121 108306077 -
Spst Spst9g01884 Chr9 25096975 25098855 +
Vimu Vimu10g01824 Chr10 25825071 25832728 +
Pvu Pvu9g1600 Chr9 22473148 22484533 +
Adu Adu08g02582 Chr08 41908244 41925183 -
Ahy Ahy18g2756 Chr18 131212808 131230020 -
Ahy Ahy8g2493 Chr8 47717643 47736652 -
Aip Aip08g03137 Chr08 121594957 121611928 -
Arst Arst8g03564 Chr8 46280857 46298034 -
Spst Spst9g01882 Chr9 24898550 24900709 -
Vimu Vimu10g01826 Chr10 25835351 25839907 +
Pvu Pvu9g1601 Chr9 22492177 22499197 +
Amo Amo08g2160 Chr08 34540393 34548114 -
Dod Dod09g0841 Chr09 26676990 26701426 +
Spst Spst9g01880 Chr9 24865220 24880820 -
Vimu Vimu10g01827 Chr10 25852951 25863388 +
Pvu Pvu9g1602 Chr9 22508153 22511749 +
Adu Adu08g02581 Chr08 41885585 41889416 -
Ahy Ahy18g2755 Chr18 131182709 131186460 -
Ahy Ahy8g2492 Chr8 47705491 47709258 -
Aip Aip08g03136 Chr08 121565942 121569823 -
Amo Amo08g2159 Chr08 34510838 34514692 -
Dod Dod09g0842 Chr09 26710303 26713432 +
Pvu Pvu9g1603 Chr9 22545310 22545711 +
Dod Dod09g0843 Chr09 26724207 26724670 +
Spst Spst9g01876 Chr9 24784338 24784730 -
Vimu Vimu10g01831 Chr10 25899326 25899727 +
Pvu Pvu9g1604 Chr9 22552261 22566378 +
Adu Adu08g02578 Chr08 41849100 41861339 -
Ahy Ahy18g2753 Chr18 131145318 131157721 -
Ahy Ahy8g2489 Chr8 47667099 47679765 -
Aip Aip08g03133 Chr08 121526467 121538667 -
Amo Amo08g2155 Chr08 34471820 34485088 -
Arst Arst8g03560 Chr8 46221591 46234155 -
Dod Dod09g0846 Chr09 26872329 26884943 +
Lal Lal21g0668 Chr21 5176687 5193870 -
Lan Lan3g0713 Chr3 12853050 12873522 +
Spst Spst9g01875 Chr9 24720729 24734273 -
Vimu Vimu10g01832 Chr10 25918633 25931330 +
Pvu Pvu9g1605 Chr9 22568381 22575241 -
Adu Adu08g02577 Chr08 41843118 41848820 +
Ahy Ahy18g2752 Chr18 131139515 131145046 +
Ahy Ahy8g2488 Chr8 47660869 47666837 +
Aip Aip08g03132 Chr08 121520675 121526203 +
Arst Arst8g03559 Chr8 46215792 46221466 +
Dod Dod09g0848 Chr09 26902368 26905988 -
Spst Spst9g01874 Chr9 24709046 24720174 +
Vimu Vimu10g01834 Chr10 25939567 25949122 -
Pvu Pvu9g1606 Chr9 22617152 22620144 +
Dod Dod09g0849 Chr09 26949211 26951947 +
Vimu Vimu10g01835 Chr10 26101263 26106418 +
Pvu Pvu9g1607 Chr9 22629302 22629952 -
Dod Dod09g0850 Chr09 26964704 26965399 -
Spst Spst9g01870 Chr9 24601480 24601953 +