Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01826 ATGAACGTTCTGAACGTGGCGGAGAAGCCCTCTGTGGCGAAGTCCGTCTCCACCATCCTCTCCCGGAACCAGGGCATGAGAATGCGGGAGGGGCGTTCCCGCTACAATAAGATCTTTGAGTTCAACTACACCATTCGCGGCCAACCCTGCCACATGCTCTTCACCTCCGTCACCGGCCATCTCATGGAGCTCGAGTTCGACGAGCGTTACCGCAAGTGGCACGCGTGTAATCCCGCCGACCTCTTCCGCGCCCCTGTCCATAAATCCGTCCCGGAGGACAAAAAGGATATCAAGAGGACGCTGGAGGAGGAAGCGAGGAGGTGCCAGTGGCTTGTTTTGTGGCTCGATTGCGATAGAGAGGGTGAGAACATTGCGTTTGAAGTGATTGACGTCTGTACTGCGGTGAATCCTCATCTTACTATAAAACGGGCTCGGTTTTCTGCATTGATTGAGAGAGAGATCCATCATTCTGTTCAGAATCTTGAGGAGCCCAAGAAATGTCTTGCTGATGCAGTCGATGCTAGGCAGTTTCCCACACTTGGATTTGTCGTGGAAAGATATTGGGAGATACAAGCACATGAGCCAGAAGAGTTTTGGTCTATCAACTGCGCTCATGATTCAGATGGACGCATTGCTAAGTTCAGCTGGATGCGAGGCCACTTGTTTGATTATACATGTGCAGTTATAATATATGAGATGTGTGTTGAGGAACCGACAGCAACAGTGACAAACGTTAGACAACAGGAAAAACTGAAGTATCCTCCACATCCTTTGAATACCATTGAGCTAGAAAAACGTGCTTCAAGATACTTCAGGATGAGTTCTGAGCACACAATGAAGGTGACTGGAGATTACCGTTTGTTTGTGTGCTTTCTACTAATGAGTGATATCTATTTCAAGCTGTGGCAGAAGAACTTTACCAAGCCGGTTTCATCAGTTACCCCCGTACAGAGACTGATAATTTTTCTTCAAGGACTGACTTGCATGTGGACAATTGTGCAAGAACAGCAAGGGCATCCTGAGTGGGGGGTATATGCACAACGGTTGTTGGACCCTGGGACAGGGCTTTGGAGAAACCCTAGAGGTGGTGGACATGATGACAAGGCTCATCCACCCATTCACCCAACAAAATTTTCTACCGGAGAATCTGGATGGAGCCAAGACCACCGTAAACTGTATGAGCTGGTTGTTCGCCACTTTTTGGCATGTGTCTCAAAGCCTGCTGTAGGAGCTGAAACCACCGTTGAAATTGGTATTGCTGGTGAACTATTTTCTGCATGTGGGAGGGTGATTCTAGAGGTGAGATGTTTGTTCTGCATGATGTGGATGGCCCATATTGGGATGTAA 1347 0.4833 MNVLNVAEKPSVAKSVSTILSRNQGMRMREGRSRYNKIFEFNYTIRGQPCHMLFTSVTGHLMELEFDERYRKWHACNPADLFRAPVHKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVIDVCTAVNPHLTIKRARFSALIEREIHHSVQNLEEPKKCLADAVDARQFPTLGFVVERYWEIQAHEPEEFWSINCAHDSDGRIAKFSWMRGHLFDYTCAVIIYEMCVEEPTATVTNVRQQEKLKYPPHPLNTIELEKRASRYFRMSSEHTMKVTGDYRLFVCFLLMSDIYFKLWQKNFTKPVSSVTPVQRLIIFLQGLTCMWTIVQEQQGHPEWGVYAQRLLDPGTGLWRNPRGGGHDDKAHPPIHPTKFSTGESGWSQDHRKLYELVVRHFLACVSKPAVGAETTVEIGIAGELFSACGRVILEVRCLFCMMWMAHIGM 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01826 448 CDD TOPRIM_TopoIA_TopoIII 2 161 IPR034144 -
Vimu10g01826 448 Gene3D - 1 164 - -
Vimu10g01826 448 ProSiteProfiles Toprim domain profile. 2 147 IPR006171 -
Vimu10g01826 448 Pfam Toprim domain 4 148 IPR006171 -
Vimu10g01826 448 PRINTS Prokaryotic DNA topoisomerase I signature 111 124 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vimu10g01826 448 PRINTS Prokaryotic DNA topoisomerase I signature 392 408 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vimu10g01826 448 PANTHER PROKARYOTIC DNA TOPOISOMERASE 1 176 IPR000380 GO:0003677|GO:0003917|GO:0006265
Vimu10g01826 448 SMART toprim5 2 137 IPR006171 -
Vimu10g01826 448 Pfam DNA topoisomerase 340 433 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vimu10g01826 448 Pfam DNA topoisomerase 176 281 IPR013497 GO:0003677|GO:0003916|GO:0006265
Vimu10g01826 448 Gene3D Topoisomerase I, domain 4 326 406 IPR013826 -
Vimu10g01826 448 FunFam DNA topoisomerase 1 164 - -
Vimu10g01826 448 Gene3D Topoisomerase I, domain 3 195 304 IPR013825 -
Vimu10g01826 448 SMART topIban2 140 200 IPR003601 GO:0003677|GO:0003916|GO:0006265
Vimu10g01826 448 SMART topIaneu2 246 446 IPR003602 GO:0003677|GO:0003916|GO:0006265
Vimu10g01826 448 SUPERFAMILY Prokaryotic type I DNA topoisomerase 1 433 IPR023405 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01826 K03165 - gmx:100818971 678.707