Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g01824 ATGGAACCCGAACATTCTGATTCCAACTTGCTGTTGTTTCTGCCGGACGATGTTTTCGCCGTTGTTTCTCGCTTCCTGTCGCCGAGAGACGTGTGCAATCTGTGTCTGTGTTGCAAGAGTTTGAACGCTCTTGTGGCCTCTGAGAAACTCTGGCTCACGCAATGTGACGATTTGGGCATAGTGACCCACAAGGATCTTGTGGAATGGAGGAAGGGTGTGGCTTCTTACAAGGCGCTTTGTCGGTTTCTGGTGGGTGTGAAACCATTGATTGGAATATGGGTTCACCAGAATCCTGAGCTTGGGAACGTGGTGTATGTGATGCCTGGTTTCGTATCTGTTGTTGGGTGCAGGATAATTCCCCAGGAGCTTGGTCCTTTGGGGATTGAAGAGGGTCCCATACTGTGGGCTTCTGTGTTTGAGGTTGTTAGTGATTATGATGGTTCCATGATGTTTTTTCTTCATGGGAGGGAGAAGGGTGTGAATTATGTTTATCCCGGTTCGGTCAAGCTTACAGATAAGTCCTGTAATGTACTGTTGCTTGAGGTTGAACCTGGGGGGTGTAGCAGTGTTAGTGCTTTGTTGCAGAGTAAGAGCTTTGTGCATTACTCGGGCTTGGAGTCTTCATCGTCGAGGAAGGTTTGTAGGTCAATCAGTGATGTTTCTAGTTCACAAAGGGTGGTTGGAAATGCTGAAGGGATGGTTGGTTTTGGGAAGTTAGCTTTTAGTGATAGGAGAAAGTTGCTTGAGGTTACTACTAGCCATGTTCGACAAAAGGTTCCGGATAAGATGATTGGGCCGTTGTTTCCTAGGTTGAGGGATGATGAGGAGAATTTTCAGAAGGATTTGGCGCTTTTGTGGGAAAGAAGATCACTCCTTAGTCAAATGTATAAGGCTGGTAGTGGTGAGGTTGATGAGTATAAGTTGAGTTCTCAGGATGCAGTTGATCCAACCCAGTTGGAATTGGGTGATGTTAGAGCGAGATTTGACCTGAGGTCTATCTCTCATCCTCTGCCCGAGGAGGATGGTAACACTCAGTGCATCAAGAGGAAAGGTCTTAGGGGATATTTCTGGAATGGCATTAAGCAAATGCTTGGAAGATCAAATTCAATGAATGGCAATCATTCAGTTTCCAAGAAGAAGCTTACGTCAAGCGGTGAGATTAGGCATGCACGGCTTCAAGAATTCCTTAGATCGAGTGACACAGTAAGGCTAACGTTAAAAGCATCAACTGTGAAGCTATCTTCTTACCGGGCATGGCCAAATATGCACGATAGTAGGTTTGCGCTTTACAAGTTGCCATTGCGAGTTCCTAGAGATGACCAAGAATATGCTGGTTTATGGGGAGGAACTTTTGGTTGGCCTCCTGGAAAACCTTCCGAAGACAAGCCTGGAAAGGCTTTGTTCTTTCTCCTGCTCTCTTATGAGGAGTTCCAGGGACAACAGCTTCTCATTGCAACCAAAATTTTGGAAGGCACCCACTATGTTTTGCATCCTAATGGTTCAGCAATGTTCACAGCGAATATCAATGAACCTTCGTCCGAAACCTTTCCCTGGGATACCGATGCAGATTTGGTTCCTGTGAATGTCAACCATGCTTTTGTGGGAGAGGGTATTGCAAGTGGTTATGGGTTCAGATACCCTGGATCAAAGCCTGGTTCCCTCTTTGTTTTTCAAAATGGCATCCTTGCTTTCATGTGGAAGGAGTCAAGAGTTGTTTTGACCTTGCAAAGACTTAACTTACAAGAACTTTTGAAGAAGGGTGAAAGGGTATCCTCTCTGCCCCCGGTTACCAATTTTTCATATCTGACAAAGTCCTACTCGAATGTGTTTGCTGGCCTCCCCAGCTCTTCCAATTTTTTGTCTTCACCAAGGTTTGCCTTAACCCTGACATTTCACCTTTTTTTTAAACTTTCCCCTCAATCTGGCGTATCGTATTAA 1938 0.453 MEPEHSDSNLLLFLPDDVFAVVSRFLSPRDVCNLCLCCKSLNALVASEKLWLTQCDDLGIVTHKDLVEWRKGVASYKALCRFLVGVKPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGIEEGPILWASVFEVVSDYDGSMMFFLHGREKGVNYVYPGSVKLTDKSCNVLLLEVEPGGCSSVSALLQSKSFVHYSGLESSSSRKVCRSISDVSSSQRVVGNAEGMVGFGKLAFSDRRKLLEVTTSHVRQKVPDKMIGPLFPRLRDDEENFQKDLALLWERRSLLSQMYKAGSGEVDEYKLSSQDAVDPTQLELGDVRARFDLRSISHPLPEEDGNTQCIKRKGLRGYFWNGIKQMLGRSNSMNGNHSVSKKKLTSSGEIRHARLQEFLRSSDTVRLTLKASTVKLSSYRAWPNMHDSRFALYKLPLRVPRDDQEYAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQGQQLLIATKILEGTHYVLHPNGSAMFTANINEPSSETFPWDTDADLVPVNVNHAFVGEGIASGYGFRYPGSKPGSLFVFQNGILAFMWKESRVVLTLQRLNLQELLKKGERVSSLPPVTNFSYLTKSYSNVFAGLPSSSNFLSSPRFALTLTFHLFFKLSPQSGVSY 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g01824 645 ProSiteProfiles F-box domain profile. 8 54 IPR001810 GO:0005515
Vimu10g01824 645 SMART fbox_2 14 54 IPR001810 GO:0005515
Vimu10g01824 645 SUPERFAMILY F-box domain 5 63 IPR036047 GO:0005515
Vimu10g01824 645 Gene3D - 2 81 - -
Vimu10g01824 645 PANTHER F-BOX PROTEIN FAMILY-LIKE 4 624 IPR040275 -
Vimu10g01824 645 Pfam F-box domain 14 52 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g01824 Vimu-Chr10 25825071 25832728 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g01824 - - gsj:114415803 1129.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04212 11 63613775 63621933 Vimu10g01824 10 25825071 25832728 PCT